Experimental Design Details for GSE299341 - Altered mRNA transport and local translation in i3Neurons with RNA binding protein knockdown

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Dataset Name Altered mRNA transport and local translation in i3Neurons with RNA binding protein knockdown
Description
Neurons rely on mRNA transport and local translation to facilitate rapid protein synthesis in processes far from the cell body. These processes allow precise spatial and temporal control of translation and are mediated by RNA binding proteins (RBPs), including those associated with neurodegenerative diseases. Here, we use proteomics, transcriptomics, and microscopy to investigate the impact of RBP depletion on mRNA transport and local translation in iPSC-derived neurons. We find thousands of transcripts enriched in neurites and that many of these transcripts are locally translated, possibly due to the shorter length of transcripts in neurites. Loss of frontotemporal dementia/amyotrophic lateral sclerosis (FTD/ALS)-associated RBPs TDP-43 and hnRNPA1 lead to distinct alterations in the neuritic proteome and transcriptome. TDP-43 knockdown (KD) leads to slightly increased neuritic mRNA and translation. In contrast, hnRNPA1 leads to more moderate effects on local mRNA profiles, possibly due to compensation by hnRNPA3. These results highlight the crucial role of FTD/ALS-associated RBPs in mRNA transport and local translation in neurons and the importance of these processes in neuron health and disease. At time of import, last updated (by provider) on: Aug 06 2025 Contributors: ; [Puja R Mehta, Mike A Nalls, Ying Hao, Ziyi Li, Benjamin Packer, Cory A Weller, Christina Como, Nicholas L Johnson, Yue A Qi, Pietro Fratta, Stephanie L Sarbanes, Rachael Dargan, Matthew Keuss, Veronica H Ryan, Alla Mikheenko, Colleen Bereda, Emma J Craig]
Accession GSE299341 GEO logo
Publication Dargan, Rachael et al. (2025) PubMed Link