Subsets of GSE227382 - Single genomic enhancers drive experience-dependent GABAergic plasticity to maintain sensory processing in the adult cortex (RNA-Seq)

Description:
Experience-dependent plasticity of synapses modulates information processing in neural circuits and is essential for cognitive functions. The genome, via non-coding enhancers, was proposed to control information processing and circuit plasticity by regulating experience-induced transcription of genes that modulate specific sets of synapses. To test this idea, we analyze here the cellular and circuit functions of the genomic mechanisms that control the experience-induced transcription of Igf1 (insulin-like growth factor 1) in vasoactive intestinal peptide (VIP) interneurons (INs) in the visual cortex of adult mice. We find that two sensory-induced enhancers selectively and cooperatively drive the activity-induced transcription of Igf1 to thereby promote GABAergic inputs onto VIP INs and to homeostatically control the ratio between excitation and inhibition (E/I ratio)—in turn, this restricts neural activity in VIP INs and principal excitatory neurons and maintains spatial frequency tuning. Thus, enhancer-mediated activity-induced transcription maintains sensory processing in the adult cortex via homeostatic modulation of E/I ratio. At time of import, last updated (by provider) on: Jul 28 2023 Contributors: ; [Ori Roethler, Lidor Bitan, Ivo Spiegel, Eran Zohar, Katayun Cohen-Kashi Malina, Harrison Wren Gabel]
Accession: GSE227382 
Publication: Roethler, Ori et al. (2023)  
Dimension: 41316 (96 samples)
Quantitation types:
Subsets:
Name biological sex collection of material treatment
nuclear RNA extract derived from cell vasoactive intestinal peptide secreting cell
total RNA extract
Assays:
E1_Ctrl_Stim_Total_BioRep_5
E1_Ctrl_Stim_Total_BioRep_2
E1_KO_Unstim_Total_BioRep_2
E23_KO_Unstim_Total_BioRep_2
E23_Ctrl_Unstim_VIP_BioRep_2
E1_Ctrl_Unstim_Total_BioRep_3
E1_Ctrl_Stim_VIP_BioRep_2
E123_Ctrl_Unstim_Total_BioRep_4
E123_Ctrl_Stim_VIP_BioRep_4
E1_Ctrl_Unstim_Total_BioRep_2
E1_KO_Stim_Total_BioRep_3
E123_Ctrl_Stim_VIP_BioRep_2
E23_KO_Unstim_VIP_BioRep_4
E23_Ctrl_Stim_VIP_BioRep_1
E23_KO_Unstim_Total_BioRep_3
E123_Ctrl_Stim_Total_BioRep_4
E1_Ctrl_Stim_VIP_BioRep_5
E123_KO_Unstim_Total_BioRep_3
E123_Ctrl_Unstim_VIP_BioRep_2
E23_KO_Stim_Total_BioRep_4
E1_Ctrl_Unstim_Total_BioRep_1
E123_KO_Unstim_VIP_BioRep_2
E23_KO_Stim_VIP_BioRep_2
E123_Ctrl_Unstim_Total_BioRep_2
E23_Ctrl_Unstim_Total_BioRep_1
E123_KO_Stim_Total_BioRep_3
E123_Ctrl_Unstim_VIP_BioRep_4
E123_Ctrl_Unstim_Total_BioRep_1
E123_Ctrl_Stim_Total_BioRep_1
E1_KO_Stim_Total_BioRep_2
E1_KO_Stim_VIP_BioRep_3
E23_Ctrl_Stim_Total_BioRep_2
E1_KO_Stim_VIP_BioRep_4
E123_KO_Stim_VIP_BioRep_4
E123_Ctrl_Stim_Total_BioRep_3
E23_Ctrl_Unstim_Total_BioRep_3
E1_KO_Stim_Total_BioRep_1
E123_Ctrl_Stim_Total_BioRep_2
E123_KO_Stim_VIP_BioRep_3
E23_KO_Stim_Total_BioRep_3
E23_Ctrl_Stim_Total_BioRep_1
E123_KO_Stim_VIP_BioRep_1
E23_KO_Stim_Total_BioRep_2
E23_Ctrl_Unstim_VIP_BioRep_1
E23_Ctrl_Unstim_Total_BioRep_2
E123_KO_Stim_Total_BioRep_4
E23_KO_Stim_VIP_BioRep_4
E1_KO_Unstim_VIP_BioRep_3
E23_Ctrl_Unstim_VIP_BioRep_3
E23_KO_Stim_VIP_BioRep_3
E123_KO_Stim_Total_BioRep_2
E123_Ctrl_Unstim_VIP_BioRep_1
E123_KO_Unstim_VIP_BioRep_1
E123_Ctrl_Unstim_Total_BioRep_3
E23_KO_Stim_Total_BioRep_1
E23_KO_Unstim_Total_BioRep_1
E1_KO_Unstim_VIP_BioRep_2
E123_Ctrl_Unstim_VIP_BioRep_3
E1_Ctrl_Stim_VIP_BioRep_4
E23_KO_Unstim_VIP_BioRep_3
E1_KO_Stim_VIP_BioRep_2
E23_Ctrl_Stim_Total_BioRep_3
E1_KO_Unstim_VIP_BioRep_5
E123_Ctrl_Stim_VIP_BioRep_3
E23_Ctrl_Unstim_Total_BioRep_4
E23_KO_Unstim_Total_BioRep_4
E1_Ctrl_Unstim_VIP_BioRep_1
E123_Ctrl_Stim_VIP_BioRep_1
E1_KO_Unstim_Total_BioRep_1
E1_KO_Unstim_VIP_BioRep_4
E23_Ctrl_Stim_Total_BioRep_4
E1_Ctrl_Stim_Total_BioRep_1
E1_KO_Unstim_Total_BioRep_5
E123_KO_Unstim_Total_BioRep_1
E1_Ctrl_Unstim_VIP_BioRep_3
E23_Ctrl_Stim_VIP_BioRep_2
E1_Ctrl_Stim_VIP_BioRep_3
E23_Ctrl_Stim_VIP_BioRep_4
E23_KO_Unstim_VIP_BioRep_2
E1_KO_Unstim_VIP_BioRep_1
E123_KO_Unstim_Total_BioRep_2
E23_Ctrl_Stim_VIP_BioRep_3
E1_Ctrl_Stim_Total_BioRep_4
E1_KO_Stim_Total_BioRep_4
E23_KO_Stim_VIP_BioRep_1
E1_KO_Stim_VIP_BioRep_1
E23_Ctrl_Unstim_VIP_BioRep_4
E1_Ctrl_Stim_VIP_BioRep_1
E23_KO_Unstim_VIP_BioRep_1
E1_Ctrl_Unstim_VIP_BioRep_2
E1_KO_Unstim_Total_BioRep_3
E123_KO_Stim_Total_BioRep_1
E123_KO_Stim_VIP_BioRep_2
E1_Ctrl_Stim_Total_BioRep_3
E123_KO_Unstim_VIP_BioRep_3
E1_KO_Unstim_Total_BioRep_4
Heatmap of the expression data of Single genomic enhancers drive experience-dependent GABAergic plasticity to maintain sensory processing in the adult cortex (RNA-Seq). The rows correspond to genes and columns to assays.