Subsets of GSE15390 - FOXP3-mediated inhibition of the global gene regulator SATB1 is required for maintaining regulatory T cell commitment

Description:
Regulatory T (Treg) cells are involved in self tolerance, immune homeostasis, prevention of autoimmunity, and suppression of immunity to pathogens or tumours. The forkhead transcription factor FOXP3 is essential for Treg cell development and function as mutations in FOXP3 cause severe autoimmunity in mice and humans. However, the FOXP3-dependent molecular mechanisms leading to this severe phenotype are not well understood. Here we introduce the chromatin remodelling enzyme SATB1 (special AT-rich sequence-binding protein-1) as an important target gene of FOXP3. So far, SATB1 has been associated with normal thymic T-cell development, peripheral T-cell homeostasis, TH1/TH2 polarization, and reprogramming of gene expression. In natural and induced murine and human FOXP3+ Treg cells SATB1 expression is significantly reduced. While there is no differential epigenetic regulation of the SATB1 locus between Treg and Teffector cells, FOXP3 reduces SATB1 expression directly as a transcriptional repressor at the SATB1 locus and indirectly via miR-155 induction, which specifically binds to the 3’UTR of the SATB1 mRNA. Reduced SATB1 expression in FOXP3+ cells achieved either by overexpression or induction of FOXP3 is linked to significant reduction in TH1 and TH2 cytokines, while loss of FOXP3 function either by knock down or genetic mutation leads to significant upregulation of SATB1 and subsequent cytokine production. Alltogether, these findings demonstrate that reduced SATB1 expression in Treg cells is necessary for maintenance of a Treg-cell phenotype in vitro and in vivo and places SATB1-mediated T cell-specific modulation of global chromatin remodelling central during the decision process between effector and regulatory T-cell function. Last Updated (by provider): Nov 14 2011 Contributors: Marc Beyer S Classen J Schultze
Accession: GSE15390 
Publication: Beyer, Marc et al. (2011)  
Dimension: 4518 (149 samples)
Quantitation types:
Subsets:
CD25-positive, alpha-beta regulatory T cell
CD25-positive, alpha-beta regulatory T cell
alpha-beta T cell
alpha-beta T cell negative for product of gene IL2RA [human] interleukin 2 receptor, alpha
Note: These subsets are not associated to any experimental factor.
Assays:
41_4_expTreg + RAPA +CD3/28
40_4_expTreg + CD3/28
39_4_expTreg + RAPA
38_4_expTreg
37_4_aCD4+CD25+ Treg CLL
36_4_aCD4+CD25+ Treg
33_4_CD4+CD25highCD127low Treg
32_4_CD4+CD25+ Treg
31_4_CD4+CD25+ Treg CLL
30_4_CD4+CD25low-int
23_4_CD4+CD25- Tconv
22_7_CD4+ 0h
22_6_CD4+ 0h
22_5_CD4+ 0h
22_4_CD4+ 0h
20_6_Tconv 20h
20_5_Tconv 20h
20_4_Tconv 20h
17_4_Tconv_12h
16_4_CD4 T cells
14_4_20h+10ng TGF
13_4_20h+1ng TGF
9_4_aCD4+CD25-
8_4_CD3
7_4_CTLA4
5_4_PGE2
4_4_IL10
3_4_VEGF
2_4_TGF_1
1_4_CD3CD28
21_3_Tconv 18+8hrs
21_2_Tconv 18+8hrs
21_1_Tconv 18+8hrs
19_1_Tconv 18+1hrs
19_2_Tconv 18+1hrs
19_3_Tconv 18+1hrs
10_1_Tconv 18+1hrs TGF
10_2_Tconv 18+1hrs TGF
10_3_Tconv 18+1hrs TGF
6_4_PD1
33_2_CD4+CD25highCD127low Treg
28_1_CD4+CD25low
33_1_CD4+CD25highCD127low Treg
28_3_CD4+CD25low
33_3_CD4+CD25highCD127low Treg
28_2_CD4+CD25low
5_1_PGE2
5_3_PGE2
2_3_TGF_3
2_1_TGF_1
5_2_PGE2
2_2_TGF_2
18_1_Tconv_18h
41_1_expTreg + RAPA +CD3/28
18_2_Tconv_18h
41_3_expTreg + RAPA +CD3/28
18_3_Tconv_18h
41_2_expTreg + RAPA +CD3/28
4_1_IL10
4_3_IL10
16_1_CD4 T cells
16_3_CD4 T cells
4_2_IL10
16_2_CD4 T cells
14_2_20h+10ng TGF
14_1_20h+10ng TGF
14_3_20h+10ng TGF
17_3_Tconv_12h
9_3_aCD4+CD25-
17_2_Tconv_12h
9_2_aCD4+CD25-
17_1_Tconv_12h
9_1_aCD4+CD25-
3_1_VEGF
3_3_VEGF
3_2_VEGF
39_2_expTreg + RAPA
39_3_expTreg + RAPA
39_1_expTreg + RAPA
26_1_CD4+CD25- Tconv 6h
26_2_CD4+CD25- Tconv 6h
26_3_CD4+CD25- Tconv 6h
13_2_20h+1ng TGF
13_1_20h+1ng TGF
13_3_20h+1ng TGF
7_3_CTLA4
7_1_CTLA4
7_2_CTLA4
25_2_CD4+CD25- Tconv
25_1_CD4+CD25- Tconv
24_2_CD4+CD25- Tconv
24_1_CD4+CD25- Tconv
1_3_CD3CD28
1_2_CD3CD28
1_1_CD3CD28
8_3_CD3
8_2_CD3
8_1_CD3
37_3_aCD4+CD25+ Treg CLL
36_3_aCD4+CD25+ Treg
31_3_CD4+CD25+ Treg CLL
15_3_Tconv + TGF
37_2_aCD4+CD25+ Treg CLL
36_2_aCD4+CD25+ Treg
31_2_CD4+CD25+ Treg CLL
15_2_Tconv + TGF
37_1_aCD4+CD25+ Treg CLL
36_1_aCD4+CD25+ Treg
31_1_CD4+CD25+ Treg CLL
15_1_Tconv + TGF
38_2_expTreg
38_3_expTreg
38_1_expTreg
30_3_CD4+CD25low-int
30_2_CD4+CD25low-int
30_1_CD4+CD25low-int
20_1_Tconv 20h
20_2_Tconv 20h
20_3_Tconv 20h
6_2_PD1
6_1_PD1
6_3_PD1
35_1_CD4+CD25+ 6h Treg
35_2_CD4+CD25+ 6h Treg
29_3_CD4+CD25int
29_2_CD4+CD25int
29_1_CD4+CD25int
12_2_Tconv 18+8hrs TGF
11_2_Tconv 18+2hrs TGF
12_3_Tconv 18+8hrs TGF
11_3_Tconv 18+2hrs TGF
12_1_Tconv 18+8hrs TGF
11_1_Tconv 18+2hrs TGF
40_2_expTreg + CD3/28
40_3_expTreg + CD3/28
40_1_expTreg + CD3/28
34_2_CD4+CD25+ 0h Treg
27_2_CD4+CD25- Tconv 0h
34_1_CD4+CD25+ 0h Treg
27_1_CD4+CD25- Tconv 0h
22_3_CD4+ 0h
22_2_CD4+ 0h
22_1_CD4+ 0h
32_3_CD4+CD25+ Treg
23_3_CD4+CD25- Tconv
32_2_CD4+CD25+ Treg
23_2_CD4+CD25- Tconv
32_1_CD4+CD25+ Treg
23_1_CD4+CD25- Tconv
Heatmap of the expression data of FOXP3-mediated inhibition of the global gene regulator SATB1 is required for maintaining regulatory T cell commitment. The rows correspond to genes and columns to assays.
Unmapped: GI_42658506-S
Unmapped: hmm23642-S
GML
Unmapped: hmm27981-S
TBRG4
NEK5
Unmapped: hmm32658-S
Unmapped: Hs.321612-S
DDX3X
Unmapped: Hs.459675-S
Unmapped: GI_41209810-S
RABAC1
Unmapped: Hs.466063-S
Unmapped: GI_20538828-S
Unmapped: GI_37541238-S
Unmapped: hmm35471-S
Unmapped: Hs.485824-S
MESP2
Unmapped: GI_17437660-S
Unmapped: GI_42655996-S