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Gemma 1.26.3 API

Packages 
Package Description
ubic.gemma.core.analysis.expression  
ubic.gemma.core.analysis.expression.coexpression  
ubic.gemma.core.analysis.expression.coexpression.links  
ubic.gemma.core.analysis.expression.diff  
ubic.gemma.core.analysis.preprocess  
ubic.gemma.core.analysis.preprocess.batcheffects  
ubic.gemma.core.analysis.preprocess.filter  
ubic.gemma.core.analysis.preprocess.normalize  
ubic.gemma.core.analysis.preprocess.svd  
ubic.gemma.core.analysis.report  
ubic.gemma.core.analysis.sequence  
ubic.gemma.core.analysis.service  
ubic.gemma.core.analysis.util  
ubic.gemma.core.annotation.reference  
ubic.gemma.core.apps  
ubic.gemma.core.association.phenotype  
ubic.gemma.core.association.phenotype.fileUpload.literatureEvidence  
ubic.gemma.core.datastructure.matrix  
ubic.gemma.core.expression.experiment  
ubic.gemma.core.expression.experiment.service  
ubic.gemma.core.externalDb  
ubic.gemma.core.genome.gene  
ubic.gemma.core.genome.gene.service  
ubic.gemma.core.image  
ubic.gemma.core.image.aba  
ubic.gemma.core.infrastructure.common  
ubic.gemma.core.infrastructure.jms  
ubic.gemma.core.job  
ubic.gemma.core.job.executor.common  
ubic.gemma.core.job.executor.webapp  
ubic.gemma.core.job.executor.worker  
ubic.gemma.core.job.grid.util  
ubic.gemma.core.job.progress  
ubic.gemma.core.loader.association  
ubic.gemma.core.loader.association.phenotype  
ubic.gemma.core.loader.entrez  
ubic.gemma.core.loader.entrez.pubmed  
ubic.gemma.core.loader.expression  
ubic.gemma.core.loader.expression.arrayDesign  
ubic.gemma.core.loader.expression.arrayExpress  
ubic.gemma.core.loader.expression.arrayExpress.util  
ubic.gemma.core.loader.expression.geo  
ubic.gemma.core.loader.expression.geo.fetcher  
ubic.gemma.core.loader.expression.geo.model  
ubic.gemma.core.loader.expression.geo.service  
ubic.gemma.core.loader.expression.geo.util  
ubic.gemma.core.loader.expression.simple  
ubic.gemma.core.loader.expression.simple.model  
ubic.gemma.core.loader.genome  
ubic.gemma.core.loader.genome.gene  
ubic.gemma.core.loader.genome.gene.ncbi  
ubic.gemma.core.loader.genome.gene.ncbi.homology  
ubic.gemma.core.loader.genome.gene.ncbi.model  
ubic.gemma.core.loader.genome.taxon  
ubic.gemma.core.loader.util  
ubic.gemma.core.loader.util.biomart  
ubic.gemma.core.loader.util.converter  
ubic.gemma.core.loader.util.fetcher  
ubic.gemma.core.loader.util.parser  
ubic.gemma.core.loader.util.sdo  
ubic.gemma.core.ontology  
ubic.gemma.core.ontology.providers  
ubic.gemma.core.search  
ubic.gemma.core.search.indexer  
ubic.gemma.core.security.audit  
ubic.gemma.core.security.authentication  
ubic.gemma.core.security.authorization.acl  
ubic.gemma.core.tasks  
ubic.gemma.core.tasks.analysis.coexp  
ubic.gemma.core.tasks.analysis.diffex  
ubic.gemma.core.tasks.analysis.expression  
ubic.gemma.core.tasks.analysis.sequence  
ubic.gemma.core.tasks.maintenance  
ubic.gemma.core.tasks.visualization  
ubic.gemma.core.util  
ubic.gemma.core.util.concurrent  
ubic.gemma.core.util.test  
ubic.gemma.core.visualization  
ubic.gemma.model  
ubic.gemma.model.analysis  
ubic.gemma.model.analysis.expression  
ubic.gemma.model.analysis.expression.coexpression  
ubic.gemma.model.analysis.expression.diff  
ubic.gemma.model.analysis.expression.pca  
ubic.gemma.model.association  
ubic.gemma.model.association.coexpression  
ubic.gemma.model.association.phenotype  
ubic.gemma.model.common  
ubic.gemma.model.common.auditAndSecurity  
ubic.gemma.model.common.auditAndSecurity.curation  
ubic.gemma.model.common.auditAndSecurity.eventType  
ubic.gemma.model.common.description  
ubic.gemma.model.common.measurement  
ubic.gemma.model.common.protocol  
ubic.gemma.model.common.quantitationtype  
ubic.gemma.model.common.search  
ubic.gemma.model.expression  
ubic.gemma.model.expression.arrayDesign  
ubic.gemma.model.expression.bioAssay  
ubic.gemma.model.expression.bioAssayData  
ubic.gemma.model.expression.biomaterial  
ubic.gemma.model.expression.designElement  
ubic.gemma.model.expression.experiment  
ubic.gemma.model.genome  
ubic.gemma.model.genome.biosequence  
ubic.gemma.model.genome.gene  
ubic.gemma.model.genome.gene.phenotype  
ubic.gemma.model.genome.gene.phenotype.valueObject  
ubic.gemma.model.genome.sequenceAnalysis  
ubic.gemma.persistence.model  
ubic.gemma.persistence.model.usertypes  
ubic.gemma.persistence.persister  
ubic.gemma.persistence.retry  
ubic.gemma.persistence.service  
ubic.gemma.persistence.service.analysis  
ubic.gemma.persistence.service.analysis.expression  
ubic.gemma.persistence.service.analysis.expression.coexpression  
ubic.gemma.persistence.service.analysis.expression.diff  
ubic.gemma.persistence.service.analysis.expression.pca  
ubic.gemma.persistence.service.analysis.expression.sampleCoexpression  
ubic.gemma.persistence.service.association  
ubic.gemma.persistence.service.association.coexpression  
ubic.gemma.persistence.service.association.phenotype  
ubic.gemma.persistence.service.association.phenotype.service  
ubic.gemma.persistence.service.common.auditAndSecurity  
ubic.gemma.persistence.service.common.auditAndSecurity.curation  
ubic.gemma.persistence.service.common.description  
ubic.gemma.persistence.service.common.measurement  
ubic.gemma.persistence.service.common.protocol  
ubic.gemma.persistence.service.common.quantitationtype  
ubic.gemma.persistence.service.expression.arrayDesign  
ubic.gemma.persistence.service.expression.bioAssay  
ubic.gemma.persistence.service.expression.bioAssayData  
ubic.gemma.persistence.service.expression.biomaterial  
ubic.gemma.persistence.service.expression.designElement  
ubic.gemma.persistence.service.expression.experiment  
ubic.gemma.persistence.service.genome  
ubic.gemma.persistence.service.genome.biosequence  
ubic.gemma.persistence.service.genome.gene  
ubic.gemma.persistence.service.genome.sequenceAnalysis  
ubic.gemma.persistence.service.genome.taxon  
ubic.gemma.persistence.util  
ubic.gemma.persistence.util.monitor  
ubic.gemma.web.controller  
ubic.gemma.web.controller.analysis.expression.coexpression.links  
ubic.gemma.web.controller.analysis.preprocess  
ubic.gemma.web.controller.analysis.sequence  
ubic.gemma.web.controller.coexpressionSearch  
ubic.gemma.web.controller.common  
ubic.gemma.web.controller.common.auditAndSecurity  
ubic.gemma.web.controller.common.auditAndSecurity.recaptcha  
ubic.gemma.web.controller.common.description.bibref  
ubic.gemma.web.controller.common.rss  
ubic.gemma.web.controller.diff  
ubic.gemma.web.controller.expression.arrayDesign  
ubic.gemma.web.controller.expression.bioAssay  
ubic.gemma.web.controller.expression.biomaterial  
ubic.gemma.web.controller.expression.designElement  
ubic.gemma.web.controller.expression.experiment  
ubic.gemma.web.controller.genome  
ubic.gemma.web.controller.genome.gene  
ubic.gemma.web.controller.monitoring  
ubic.gemma.web.controller.visualization  
ubic.gemma.web.feed  
ubic.gemma.web.listener  
ubic.gemma.web.persistence  
ubic.gemma.web.propertyeditor  
ubic.gemma.web.remote  
ubic.gemma.web.services  
ubic.gemma.web.services.rest  
ubic.gemma.web.services.rest.util  
ubic.gemma.web.services.rest.util.args  
ubic.gemma.web.taglib  
ubic.gemma.web.taglib.arrayDesign  
ubic.gemma.web.taglib.common.auditAndSecurity  
ubic.gemma.web.taglib.expression.experiment  
ubic.gemma.web.util  
ubic.gemma.web.util.upload  
ubic.gemma.web.view  
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