Package ubic.gemma.core.analysis.expression.coexpression.links

Class LinkAnalysisPersisterImpl

java.lang.Object

ubic.gemma.core.analysis.expression.coexpression.links.LinkAnalysisPersisterImpl

All Implemented Interfaces:

LinkAnalysisPersister

@Component
public class LinkAnalysisPersisterImpl
extends Object
implements LinkAnalysisPersister

Handles moving gene coexpression links from memory into the database; updates related meta-data.

Author:

Paul

Constructor Summary

Constructors

Constructor	Description
LinkAnalysisPersisterImpl()

Method Summary

Modifier and Type	Method	Description
boolean	deleteAnalyses(BioAssaySet ee)	Remove any links and coexpression analyses for the given experiment.
void	initializeLinksFromOldData(Taxon t)	Temporary method.
void	saveLinksToDb(LinkAnalysis la)	Persist links to the database.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LinkAnalysisPersisterImpl

public LinkAnalysisPersisterImpl()

Method Detail

deleteAnalyses

public boolean deleteAnalyses(BioAssaySet ee)

Description copied from interface: LinkAnalysisPersister

Remove any links and coexpression analyses for the given experiment. It gets called automatically by saveLinksToDb();

Specified by:

deleteAnalyses in interface LinkAnalysisPersister

Parameters:

ee - the experiment

Returns:

true if anything was deleted.

initializeLinksFromOldData

public void initializeLinksFromOldData(Taxon t)

Description copied from interface: LinkAnalysisPersister

Temporary method.

Specified by:

initializeLinksFromOldData in interface LinkAnalysisPersister

Parameters:

t - taxon

saveLinksToDb

public void saveLinksToDb(LinkAnalysis la)

Description copied from interface: LinkAnalysisPersister

Persist links to the database. This takes care of saving a 'flipped' version of the links.

Specified by:

saveLinksToDb in interface LinkAnalysisPersister

Parameters:

la - analysis