Package ubic.gemma.core.analysis.preprocess

Class PreprocessingException

java.lang.Object

java.lang.Throwable

java.lang.Exception

java.lang.RuntimeException

ubic.gemma.core.analysis.preprocess.PreprocessingException

All Implemented Interfaces:

Serializable

Direct Known Subclasses:

BatchInfoPopulationException, FilteringRelatedPreprocessingException, QuantitationTypeConversionRelatedPreprocessingException, QuantitationTypeDetectionRelatedPreprocessingException, SampleCoexpressionRelatedPreprocessingException, SVDRelatedPreprocessingException

public class PreprocessingException
extends RuntimeException

Allows us to catch preprocessing errors and handle them correctly.

The main kind of preprocessing exceptions are:

• QuantitationTypeDetectionRelatedPreprocessingException when QT type cannot be detected from data or when the detected one disagrees with the assigned one
• QuantitationTypeConversionRelatedPreprocessingException when a desired QT conversion is not possible
• FilteringException when processed data cannot be filtered
• BatchInfoPopulationException when batch info cannot be detected, populated, etc.
• SVDRelatedPreprocessingException when singular value decomposition fails

Author:

Paul

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
PreprocessingException(ExpressionExperiment ee, String message)
PreprocessingException(ExpressionExperiment ee, String message, Throwable cause)
PreprocessingException(ExpressionExperiment ee, Throwable cause)

Method Summary

Methods inherited from class java.lang.Throwable

addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

PreprocessingException

public PreprocessingException(ExpressionExperiment ee,
                              String message)

PreprocessingException

public PreprocessingException(ExpressionExperiment ee,
                              String message,
                              Throwable cause)

PreprocessingException

public PreprocessingException(ExpressionExperiment ee,
                              Throwable cause)