Uses of Class
ubic.gemma.core.analysis.preprocess.OutlierDetails
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Packages that use OutlierDetails Package Description ubic.gemma.core.analysis.preprocess -
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Uses of OutlierDetails in ubic.gemma.core.analysis.preprocess
Fields in ubic.gemma.core.analysis.preprocess with type parameters of type OutlierDetails Modifier and Type Field Description static Comparator<OutlierDetails>
OutlierDetails. FirstQuartileComparator
Compare outliers by first quartile Note: this comparator imposes orderings that are inconsistent with equalsstatic Comparator<OutlierDetails>
OutlierDetails. MedianComparator
Compare outliers by median correlation Note: this comparator imposes orderings that are inconsistent with equalsMethods in ubic.gemma.core.analysis.preprocess that return types with arguments of type OutlierDetails Modifier and Type Method Description Collection<OutlierDetails>
OutlierDetectionService. getOutlierDetails(ExpressionExperiment ee)
Obtain existing outlier details from a previousOutlierDetectionService.identifyOutliersByMedianCorrelation(ExpressionExperiment)
invocation.Collection<OutlierDetails>
OutlierDetectionServiceImpl. getOutlierDetails(ExpressionExperiment ee)
Collection<OutlierDetails>
OutlierDetectionService. identifyOutliersByMedianCorrelation(DoubleMatrix<BioAssay,BioAssay> cormat)
Identify outliers by sorting by median, then looking for non-overlap of first quartile-second quartile range This is exposed for efficiency in geeq score calculation, use this#identifyOutliers(ExpressionExperiment, boolean, boolean) to have the correlation matrix computed correctly for you.Collection<OutlierDetails>
OutlierDetectionService. identifyOutliersByMedianCorrelation(ExpressionExperiment ee)
Identify outliers by median correlation for the given dataset.Collection<OutlierDetails>
OutlierDetectionServiceImpl. identifyOutliersByMedianCorrelation(DoubleMatrix<BioAssay,BioAssay> cormat)
Collection<OutlierDetails>
OutlierDetectionServiceImpl. identifyOutliersByMedianCorrelation(ExpressionExperiment ee)
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