Uses of Class
ubic.gemma.core.analysis.preprocess.OutlierDetails
Packages that use OutlierDetails
Package
Description
This package contains classes for preprocessing expression data.
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Uses of OutlierDetails in ubic.gemma.core.analysis.preprocess
Fields in ubic.gemma.core.analysis.preprocess with type parameters of type OutlierDetailsModifier and TypeFieldDescriptionstatic final Comparator<OutlierDetails> OutlierDetails.FIRST_QUARTILE_COMPARATORCompare outliers by first quartile Note: this comparator imposes orderings that are inconsistent with equalsstatic final Comparator<OutlierDetails> OutlierDetails.MEDIAN_COMPARATORCompare outliers by median correlation Note: this comparator imposes orderings that are inconsistent with equalsMethods in ubic.gemma.core.analysis.preprocess that return types with arguments of type OutlierDetailsModifier and TypeMethodDescriptionOutlierDetectionService.getOutlierDetails(ExpressionExperiment ee) Obtain existing outlier details from a previousOutlierDetectionService.identifyOutliersByMedianCorrelation(ExpressionExperiment)invocation.OutlierDetectionServiceImpl.getOutlierDetails(ExpressionExperiment ee) OutlierDetectionService.identifyOutliersByMedianCorrelation(DoubleMatrix<BioAssay, BioAssay> cormat) Identify outliers by sorting by median, then looking for non-overlap of first quartile-second quartile range This is exposed for efficiency in geeq score calculation, use this#identifyOutliers(ExpressionExperiment, boolean, boolean) to have the correlation matrix computed correctly for you.OutlierDetectionService.identifyOutliersByMedianCorrelation(ExpressionExperiment ee) Identify outliers by median correlation for the given dataset.OutlierDetectionServiceImpl.identifyOutliersByMedianCorrelation(DoubleMatrix<BioAssay, BioAssay> cormat) OutlierDetectionServiceImpl.identifyOutliersByMedianCorrelation(ExpressionExperiment ee)