Package ubic.gemma.core.analysis.report

Class ArrayDesignReportServiceImpl

java.lang.Object

ubic.gemma.core.analysis.report.ArrayDesignReportServiceImpl

All Implemented Interfaces:

ArrayDesignReportService

@Component("arrayDesignReportService")
public class ArrayDesignReportServiceImpl
extends Object
implements ArrayDesignReportService

Author:

jsantos

Constructor Summary

Constructors

Constructor	Description
ArrayDesignReportServiceImpl()

Method Summary

Modifier and Type	Method	Description
void	fillEventInformation(Collection<ArrayDesignValueObject> adVos)	Fill in event information
void	fillInSubsumptionInfo(Collection<ArrayDesignValueObject> valueObjects)
void	fillInValueObjects(Collection<ArrayDesignValueObject> adVos)	Fill in the probe summary statistics
void	generateAllArrayDesignReport()	Report summarizing _all_ array designs.
void	generateArrayDesignReport()	Generate reports for all array designs, as well as the "global" report.
ArrayDesignValueObject	generateArrayDesignReport(Long id)
void	generateArrayDesignReport(ArrayDesignValueObject adVo)
String	getCreateDate(Long id)
String	getLastGeneMappingEvent(Long id)
String	getLastRepeatMaskEvent(Long id)
String	getLastSequenceAnalysisEvent(Long id)
String	getLastSequenceUpdateEvent(Long id)
ArrayDesignValueObject	getSummaryObject()	Get the cached summary object that represents all platforms.
ArrayDesignValueObject	getSummaryObject(Long id)	Get a specific cached summary object
Collection<ArrayDesignValueObject>	getSummaryObject(Collection<Long> ids)	Get the cached summary objects

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ArrayDesignReportServiceImpl

public ArrayDesignReportServiceImpl()

Method Details

generateAllArrayDesignReport

public void generateAllArrayDesignReport()

Description copied from interface: ArrayDesignReportService

Report summarizing _all_ array designs.

Specified by:

generateAllArrayDesignReport in interface ArrayDesignReportService

generateArrayDesignReport

@Secured("GROUP_AGENT")
public void generateArrayDesignReport()

Description copied from interface: ArrayDesignReportService

Generate reports for all array designs, as well as the "global" report.

Specified by:

generateArrayDesignReport in interface ArrayDesignReportService

generateArrayDesignReport

public void generateArrayDesignReport(ArrayDesignValueObject adVo)

Specified by:

generateArrayDesignReport in interface ArrayDesignReportService

generateArrayDesignReport

public ArrayDesignValueObject generateArrayDesignReport(Long id)

Specified by:

generateArrayDesignReport in interface ArrayDesignReportService

getSummaryObject

public ArrayDesignValueObject getSummaryObject(Long id)

Get a specific cached summary object

Specified by:

getSummaryObject in interface ArrayDesignReportService

Returns:

arrayDesignValueObject the specified summary object

getSummaryObject

public ArrayDesignValueObject getSummaryObject()

Get the cached summary object that represents all platforms.

Specified by:

getSummaryObject in interface ArrayDesignReportService

Returns:

arrayDesignValueObject the summary object that represents the grand total of all array designs

getSummaryObject

public Collection<ArrayDesignValueObject> getSummaryObject(Collection<Long> ids)

Get the cached summary objects

Specified by:

getSummaryObject in interface ArrayDesignReportService

Returns:

arrayDesignValueObjects the specified summary object

fillEventInformation

public void fillEventInformation(Collection<ArrayDesignValueObject> adVos)

Fill in event information

Specified by:

fillEventInformation in interface ArrayDesignReportService

fillInSubsumptionInfo

public void fillInSubsumptionInfo(Collection<ArrayDesignValueObject> valueObjects)

Specified by:

fillInSubsumptionInfo in interface ArrayDesignReportService

fillInValueObjects

public void fillInValueObjects(Collection<ArrayDesignValueObject> adVos)

Fill in the probe summary statistics

Specified by:

fillInValueObjects in interface ArrayDesignReportService

getLastSequenceUpdateEvent

public String getLastSequenceUpdateEvent(Long id)

Specified by:

getLastSequenceUpdateEvent in interface ArrayDesignReportService

getLastSequenceAnalysisEvent

public String getLastSequenceAnalysisEvent(Long id)

Specified by:

getLastSequenceAnalysisEvent in interface ArrayDesignReportService

getLastRepeatMaskEvent

public String getLastRepeatMaskEvent(Long id)

Specified by:

getLastRepeatMaskEvent in interface ArrayDesignReportService

getLastGeneMappingEvent

public String getLastGeneMappingEvent(Long id)

Specified by:

getLastGeneMappingEvent in interface ArrayDesignReportService

getCreateDate

public String getCreateDate(Long id)

Specified by:

getCreateDate in interface ArrayDesignReportService