Class GeneMappingSummary
- java.lang.Object
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- ubic.gemma.core.analysis.sequence.GeneMappingSummary
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- All Implemented Interfaces:
Serializable
public class GeneMappingSummary extends Object implements Serializable
This is a convenience value object to hold a BlatResult and its associated gene products and genes.- Author:
- jsantos, paul
- See Also:
- Serialized Form
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Constructor Summary
Constructors Constructor Description GeneMappingSummary()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addGene(GeneProductValueObject geneProduct, GeneValueObject gene)
BlatResultValueObject
getBlatResult()
String
getBlatResultId()
CompositeSequenceValueObject
getCompositeSequence()
GeneValueObject
getGene(GeneProductValueObject geneProduct)
Map<String,GeneValueObject>
getGeneProductIdGeneMap()
Map<String,GeneProductValueObject>
getGeneProductIdMap()
Map<GeneProductValueObject,GeneValueObject>
getGeneProductMap()
Collection<GeneProductValueObject>
getGeneProducts()
double
getIdentity()
double
getScore()
void
setBlatResult(BlatResultValueObject blatResult2)
void
setCompositeSequence(CompositeSequenceValueObject compositeSequence)
void
setGeneProductMap(Map<GeneProductValueObject,GeneValueObject> geneProductMap)
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Method Detail
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getBlatResult
public BlatResultValueObject getBlatResult()
- Returns:
- the blatResult
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setBlatResult
public void setBlatResult(BlatResultValueObject blatResult2)
- Parameters:
blatResult2
- the blatResult to set
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getGeneProductMap
public Map<GeneProductValueObject,GeneValueObject> getGeneProductMap()
- Returns:
- the geneProductMap
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setGeneProductMap
public void setGeneProductMap(Map<GeneProductValueObject,GeneValueObject> geneProductMap)
- Parameters:
geneProductMap
- the geneProductMap to set
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getGeneProducts
public Collection<GeneProductValueObject> getGeneProducts()
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getGene
public GeneValueObject getGene(GeneProductValueObject geneProduct)
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addGene
public void addGene(GeneProductValueObject geneProduct, GeneValueObject gene)
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getGeneProductIdGeneMap
public Map<String,GeneValueObject> getGeneProductIdGeneMap()
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getGeneProductIdMap
public Map<String,GeneProductValueObject> getGeneProductIdMap()
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getIdentity
public double getIdentity()
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getScore
public double getScore()
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getBlatResultId
public String getBlatResultId()
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getCompositeSequence
public CompositeSequenceValueObject getCompositeSequence()
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setCompositeSequence
public void setCompositeSequence(CompositeSequenceValueObject compositeSequence)
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