Package ubic.gemma.core.analysis.singleCell.aggregate
@NonNullApi
package ubic.gemma.core.analysis.singleCell.aggregate
This package contains classes for subsetting and aggregating single-cell data.
- Author:
- poirigui
-
ClassDescriptionConfiguration for aggregating single-cell data.Exception raised when aggregation fails.Utilities for aggregating single-cell data vectors.Configuration for subsetting single-cell expression data in pseudo-bulks.Co-bean facade for the
DataAddedEventaudit emission carried out at the end ofSingleCellExpressionExperimentAggregateServiceImpl.aggregateVectors(ExpressionExperiment, QuantitationType, List, CellLevelCharacteristics, ExperimentalFactor, Map, SingleCellAggregationConfig).Implementation ofSingleCellExpressionExperimentAggregateAuditService.Aggregate single-cell vectors.Methods for aggregating single-cell expression data.High-level service for creating subsets and aggregating single-cell expression experiments.Co-bean facade for theSingleCellSubSetsCreatedEventaudit emission carried out at the end ofSingleCellExpressionExperimentSubSetServiceImpl.createSubSets(ExpressionExperiment, SingleCellDimension, CellLevelCharacteristics, ExperimentalFactor, Map, SingleCellExperimentSubSetsCreationConfig).Implementation ofSingleCellExpressionExperimentSubSetAuditService.Service to create single-cell expression experiment subsets.Exception raised when aScaleTypeis not suitable for aggregating.