Uses of Class
ubic.gemma.core.apps.GemmaCLI.CommandGroup

Packages that use GemmaCLI.CommandGroup

Package	Description
ubic.gemma.core.apps
ubic.gemma.core.loader.association.phenotype
ubic.gemma.core.loader.entrez.pubmed
ubic.gemma.core.util

Uses of GemmaCLI.CommandGroup in ubic.gemma.core.apps

Methods in ubic.gemma.core.apps that return GemmaCLI.CommandGroup

Modifier and Type	Method	Description
GemmaCLI.CommandGroup	AffyDataFromCelCli.getCommandGroup()
GemmaCLI.CommandGroup	ArrayDesignAlternativePopulateCli.getCommandGroup()
GemmaCLI.CommandGroup	ArrayDesignAnnotationFileCli.getCommandGroup()
GemmaCLI.CommandGroup	ArrayDesignBlatCli.getCommandGroup()
GemmaCLI.CommandGroup	ArrayDesignMapSummaryCli.getCommandGroup()
GemmaCLI.CommandGroup	ArrayDesignProbeRenamerCli.getCommandGroup()	Deprecated.
GemmaCLI.CommandGroup	ArrayDesignRepeatScanCli.getCommandGroup()
GemmaCLI.CommandGroup	ArrayDesignSequenceManipulatingCli.getCommandGroup()
GemmaCLI.CommandGroup	BatchEffectPopulationCli.getCommandGroup()
GemmaCLI.CommandGroup	BibRefUpdaterCli.getCommandGroup()
GemmaCLI.CommandGroup	BlacklistCli.getCommandGroup()
GemmaCLI.CommandGroup	DatabaseViewGeneratorCLI.getCommandGroup()
GemmaCLI.CommandGroup	ExperimentalDesignImportCli.getCommandGroup()
GemmaCLI.CommandGroup	ExperimentalDesignViewCli.getCommandGroup()
GemmaCLI.CommandGroup	ExpressionDataMatrixWriterCLI.getCommandGroup()
GemmaCLI.CommandGroup	ExpressionExperimentManipulatingCLI.getCommandGroup()
GemmaCLI.CommandGroup	ExternalDatabaseAdderCli.getCommandGroup()
GemmaCLI.CommandGroup	ExternalDatabaseOverviewCli.getCommandGroup()
GemmaCLI.CommandGroup	ExternalDatabaseUpdaterCli.getCommandGroup()
GemmaCLI.CommandGroup	ExternalFileGeneLoaderCLI.getCommandGroup()
GemmaCLI.CommandGroup	FactorValueMigratorCLI.getCommandGroup()	Deprecated.
GemmaCLI.CommandGroup	FindObsoleteTermsCli.getCommandGroup()
GemmaCLI.CommandGroup	FixOntologyTermLabelsCli.getCommandGroup()
GemmaCLI.CommandGroup	GenerateDatabaseUpdateCli.getCommandGroup()
GemmaCLI.CommandGroup	GenericGenelistDesignGenerator.getCommandGroup()
GemmaCLI.CommandGroup	GeoGrabberCli.getCommandGroup()
GemmaCLI.CommandGroup	IndexGemmaCLI.getCommandGroup()
GemmaCLI.CommandGroup	InitializeDatabaseCli.getCommandGroup()
GemmaCLI.CommandGroup	LoadExpressionDataCli.getCommandGroup()
GemmaCLI.CommandGroup	LoadSimpleExpressionDataCli.getCommandGroup()
GemmaCLI.CommandGroup	MeshTermFetcherCli.getCommandGroup()	Deprecated.
GemmaCLI.CommandGroup	MultifunctionalityCli.getCommandGroup()
GemmaCLI.CommandGroup	NCBIGene2GOAssociationLoaderCLI.getCommandGroup()
GemmaCLI.CommandGroup	NcbiGeneLoaderCLI.getCommandGroup()
GemmaCLI.CommandGroup	OrderVectorsByDesignCli.getCommandGroup()
GemmaCLI.CommandGroup	ProcessedDataComputeCLI.getCommandGroup()
GemmaCLI.CommandGroup	PubMedLoaderCli.getCommandGroup()
GemmaCLI.CommandGroup	ReplaceDataCli.getCommandGroup()
GemmaCLI.CommandGroup	RNASeqBatchInfoCli.getCommandGroup()	Deprecated.
GemmaCLI.CommandGroup	RNASeqDataAddCli.getCommandGroup()
GemmaCLI.CommandGroup	SplitExperimentCli.getCommandGroup()
GemmaCLI.CommandGroup	SVDCli.getCommandGroup()
GemmaCLI.CommandGroup	TaxonLoaderCli.getCommandGroup()
GemmaCLI.CommandGroup	UpdateDatabaseCli.getCommandGroup()
GemmaCLI.CommandGroup	UpdateEe2AdCli.getCommandGroup()
GemmaCLI.CommandGroup	UpdateEE2CCli.getCommandGroup()
GemmaCLI.CommandGroup	UpdateGene2CsCli.getCommandGroup()
GemmaCLI.CommandGroup	UpdatePubMedCli.getCommandGroup()
GemmaCLI.CommandGroup	VectorMergingCli.getCommandGroup()
static GemmaCLI.CommandGroup	GemmaCLI.CommandGroup.valueOf(String name)	Returns the enum constant of this type with the specified name.
static GemmaCLI.CommandGroup[]	GemmaCLI.CommandGroup.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Uses of GemmaCLI.CommandGroup in ubic.gemma.core.loader.association.phenotype

Methods in ubic.gemma.core.loader.association.phenotype that return GemmaCLI.CommandGroup

Modifier and Type	Method	Description
GemmaCLI.CommandGroup	CtdDatabaseImporterCli.getCommandGroup()	Deprecated.
GemmaCLI.CommandGroup	DeleteEvidenceCLI.getCommandGroup()
GemmaCLI.CommandGroup	DgaDatabaseImporterCli.getCommandGroup()	Deprecated.
GemmaCLI.CommandGroup	EvidenceImporterAbstractCLI.getCommandGroup()	Deprecated.
GemmaCLI.CommandGroup	EvidenceImporterCLI.getCommandGroup()
GemmaCLI.CommandGroup	ExternalDatabaseEvidenceImporterAbstractCLI.getCommandGroup()	Deprecated.
GemmaCLI.CommandGroup	GwasDatabaseImporterCli.getCommandGroup()	Deprecated.
GemmaCLI.CommandGroup	LoadEvidenceForClassifier.getCommandGroup()
GemmaCLI.CommandGroup	OmimDatabaseImporterCli.getCommandGroup()	Deprecated.
GemmaCLI.CommandGroup	RgdDatabaseImporterCli.getCommandGroup()	Deprecated.
GemmaCLI.CommandGroup	SfariDatabaseImporterCli.getCommandGroup()	Deprecated.

Uses of GemmaCLI.CommandGroup in ubic.gemma.core.loader.entrez.pubmed

Methods in ubic.gemma.core.loader.entrez.pubmed that return GemmaCLI.CommandGroup

Modifier and Type	Method	Description
GemmaCLI.CommandGroup	PubMedSearcher.getCommandGroup()

Uses of GemmaCLI.CommandGroup in ubic.gemma.core.util

Methods in ubic.gemma.core.util that return GemmaCLI.CommandGroup

Modifier and Type	Method	Description
GemmaCLI.CommandGroup	CLI.getCommandGroup()	Obtain the command group for this CLI.