Package ubic.gemma.core.loader.entrez

Class EutilFetch

java.lang.Object

ubic.gemma.core.loader.entrez.EutilFetch

public class EutilFetch
extends Object

High-level API for interacting with NCBI Entrez utilities.

Author:

paul

Constructor Summary

Constructors

Constructor	Description
EutilFetch()

Method Summary

Modifier and Type	Method	Description
static Document	summary(String db, String term, int limit, String apiKey)	Attempts to fetch data via Eutils; failures will be re-attempted several times.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EutilFetch

public EutilFetch()

Method Detail

summary

@Nullable
public static Document summary(String db,
                               String term,
                               int limit,
                               @Nullable
                               String apiKey)
                        throws IOException

Attempts to fetch data via Eutils; failures will be re-attempted several times.

See ncbi help

Parameters:

db - e.g., gds.

term - search string

limit - maximum number of records to return.

apiKey -

Throws:

IOException - if there is a problem while manipulating the file

See Also:

EntrezUtils.summary(String, EntrezQuery, EntrezRetmode, int, int, String)