Package ubic.gemma.core.loader.entrez

Class EutilFetch

java.lang.Object

ubic.gemma.core.loader.entrez.EutilFetch

public class EutilFetch
extends Object

Author:

paul

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	EutilFetch.Mode

Constructor Summary

Constructors

Constructor	Description
EutilFetch()

Method Summary

Modifier and Type	Method	Description
static String	fetch(String db, String searchString, int limit)	Attempts to fetch data via Eutils; failures will be re-attempted several times.
static Document	parseStringInputStream(String details)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EutilFetch

public EutilFetch()

Method Detail

fetch

public static String fetch(String db,
                           String searchString,
                           int limit)
                    throws IOException

Attempts to fetch data via Eutils; failures will be re-attempted several times.

Parameters:

db - db

searchString - search string

limit - limit

Returns:

data

Throws:

IOException - when there are IO problems

parseStringInputStream

public static Document parseStringInputStream(String details)
                                       throws SAXException,
                                              IOException,
                                              ParserConfigurationException

Throws:

SAXException

IOException

ParserConfigurationException