Class LocalSeriesFetcher
- java.lang.Object
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- ubic.gemma.core.loader.util.fetcher.AbstractFetcher
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- ubic.gemma.core.loader.util.fetcher.FtpFetcher
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- ubic.gemma.core.loader.expression.geo.fetcher.GeoFetcher
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- ubic.gemma.core.loader.expression.geo.fetcher.SeriesFetcher
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- ubic.gemma.core.loader.expression.geo.fetcher.LocalSeriesFetcher
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- All Implemented Interfaces:
Fetcher
public class LocalSeriesFetcher extends SeriesFetcher
A fetcher that only looks locally for "family" files (GPLXXX_family, GSEXXX_family).- Author:
- pavlidis
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Field Summary
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Fields inherited from class ubic.gemma.core.loader.util.fetcher.FtpFetcher
avoidDownload, ftpClient, netDataSourceUtil
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Fields inherited from class ubic.gemma.core.loader.util.fetcher.AbstractFetcher
allowUseExisting, force, INFO_UPDATE_INTERVAL, localBasePath, log, remoteBaseDir
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Constructor Summary
Constructors Constructor Description LocalSeriesFetcher(String localPath)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description Collection<LocalFile>
fetch(String accession)
Fetch files according to the identifier provided.-
Methods inherited from class ubic.gemma.core.loader.expression.geo.fetcher.SeriesFetcher
formRemoteFilePath, initConfig
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Methods inherited from class ubic.gemma.core.loader.expression.geo.fetcher.GeoFetcher
formLocalFilePath, setNetDataSourceUtil
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Methods inherited from class ubic.gemma.core.loader.util.fetcher.FtpFetcher
defineTask, doTask, fetch, getExpectedSize, getNetDataSourceUtil, setAvoidDownload
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Methods inherited from class ubic.gemma.core.loader.util.fetcher.AbstractFetcher
fetchedFile, fetchedFile, getExistingFile, getLocalBasePath, isForce, mkdir, mkdir, setAllowUseExisting, setForce, waitForDownload
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Constructor Detail
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LocalSeriesFetcher
public LocalSeriesFetcher(String localPath)
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Method Detail
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fetch
public Collection<LocalFile> fetch(String accession)
Description copied from interface:Fetcher
Fetch files according to the identifier provided.- Specified by:
fetch
in interfaceFetcher
- Overrides:
fetch
in classFtpFetcher
- Parameters:
accession
- identifier- Returns:
- local files
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