RawDataFetcher (Gemma 1.31.13 API)

java.lang.Object
- ubic.gemma.core.loader.util.fetcher.AbstractFetcher
- - ubic.gemma.core.loader.util.fetcher.FtpFetcher
  - - ubic.gemma.core.loader.util.fetcher.FtpArchiveFetcher
    - - ubic.gemma.core.loader.expression.geo.fetcher.RawDataFetcher

All Implemented Interfaces:

ArchiveFetcher, Fetcher
```
public class RawDataFetcher
extends FtpArchiveFetcher
```
Retrieve and unpack the raw data files for GEO series. These are the CEL and other files (RPT, EXP and maybe DAT) for Affymetrix data sets. For other types of arrays there may also be raw data?

Author:

pavlidis

Field Summary
- Fields inherited from class ubic.gemma.core.loader.util.fetcher.FtpArchiveFetcher
  doDelete, expander
- Fields inherited from class ubic.gemma.core.loader.util.fetcher.FtpFetcher
  avoidDownload, ftpClient, netDataSourceUtil
- Fields inherited from class ubic.gemma.core.loader.util.fetcher.AbstractFetcher
  allowUseExisting, force, INFO_UPDATE_INTERVAL, localBasePath, log, remoteBaseDir

Constructor Summary

Constructors
Constructor Description

RawDataFetcher()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`checkForFile(String identifier)`
`Collection<LocalFile>`	`fetch(String identifier)`	Fetch files according to the identifier provided.
`protected String`	`formLocalFilePath(String identifier, File newDir)`
`protected String`	`formRemoteFilePath(String identifier)`
`void`	`initConfig()`
`void`	`setNetDataSourceUtil()`

Methods inherited from class ubic.gemma.core.loader.util.fetcher.FtpArchiveFetcher
cleanUp, doTask, initArchiveHandler, listFiles, setDeleteAfterUnpack, setExcludePattern, setForce, unPack

Methods inherited from class ubic.gemma.core.loader.util.fetcher.FtpFetcher
defineTask, fetch, getExpectedSize, getNetDataSourceUtil, setAvoidDownload

Methods inherited from class ubic.gemma.core.loader.util.fetcher.AbstractFetcher
fetchedFile, fetchedFile, getExistingFile, getLocalBasePath, isForce, mkdir, mkdir, setAllowUseExisting, waitForDownload

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - RawDataFetcher
```
public RawDataFetcher()
```
- Method Detail
  - checkForFile
```
public boolean checkForFile(String identifier)
```
  - fetch
```
public Collection<LocalFile> fetch(String identifier)
```
    Description copied from interface: Fetcher
    
    Fetch files according to the identifier provided.
    
    Specified by:
    
    fetch in interface Fetcher
    
    Overrides:
    
    fetch in class FtpFetcher
    
    Parameters:
    
    identifier - The url for the supplementary file.
    
    Returns:
    
    local files
  - setNetDataSourceUtil
```
public final void setNetDataSourceUtil()
```
    Specified by:
    
    setNetDataSourceUtil in class FtpFetcher
  - formLocalFilePath
```
protected String formLocalFilePath(String identifier,
                                   File newDir)
```
    Specified by:
    
    formLocalFilePath in class AbstractFetcher
  - formRemoteFilePath
```
protected String formRemoteFilePath(String identifier)
```
    Specified by:
    
    formRemoteFilePath in class AbstractFetcher
  - initConfig
```
public void initConfig()
```
    Specified by:
    
    initConfig in class AbstractFetcher