Package ubic.gemma.core.loader.expression.geo.service

Interface GeoBrowserService

All Known Implementing Classes:

GeoBrowserServiceImpl

public interface GeoBrowserService

Author:

paul

Method Summary

Modifier and Type	Method	Description
String	getDetails(String accession, String contextPath)	Get details from GEO about an accession.
List<GeoRecord>	getRecentGeoRecords(int start, int count)
List<GeoRecord>	searchGeoRecords(String searchString, int start, int count, boolean detailed)
boolean	toggleUsability(String accession)

Method Detail

getDetails

String getDetails(String accession,
                  String contextPath)
           throws IOException

Get details from GEO about an accession.

Parameters:

accession - accession

Returns:

details

Throws:

IOException - if there is a problem while manipulating the file

getRecentGeoRecords

List<GeoRecord> getRecentGeoRecords(int start,
                                    int count)
                             throws IOException,
                                    ParseException

Parameters:

start - page number, not starting record

count - page size

Returns:

geo records

Throws:

IOException - if there is a problem while manipulating the file

ParseException - if there is a problem with parsing

searchGeoRecords

List<GeoRecord> searchGeoRecords(String searchString,
                                 int start,
                                 int count,
                                 boolean detailed)
                          throws IOException

Parameters:

searchString - can be null

start - first record to retrieve

count - how many records to retrieve

detailed - if true, more information is retrieved (slow)

Returns:

collection of GeoRecords

Throws:

IOException

toggleUsability

boolean toggleUsability(String accession)