Class GeoService.GeoUpdateConfig

java.lang.Object

ubic.gemma.core.loader.expression.geo.service.GeoService.GeoUpdateConfig

Enclosing interface:

GeoService

public static class GeoService.GeoUpdateConfig
extends Object

Author:

paul

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	GeoService.GeoUpdateConfig.GeoUpdateConfigBuilder

Method Summary

Modifier and Type	Method	Description
static GeoService.GeoUpdateConfig.GeoUpdateConfigBuilder	builder()
boolean	isExperimentTags()
boolean	isPublications()
boolean	isSampleCharacteristics()
boolean	isSourceMetadata()	Rebuild Investigation.sourceMetadata from the series this refetch parsed.

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

builder

public static GeoService.GeoUpdateConfig.GeoUpdateConfigBuilder builder()

isExperimentTags

public boolean isExperimentTags()

isSampleCharacteristics

public boolean isSampleCharacteristics()

isPublications

public boolean isPublications()

isSourceMetadata

public boolean isSourceMetadata()

Rebuild Investigation.sourceMetadata from the series this refetch parsed.

Separate from the three above because it is the only one that writes nothing of GEO's opinion into Gemma's own curated fields: the document is a record of what GEO said, stored beside the experiment rather than merged into it. That is what makes it safe to run over the whole corpus, and why the backfill CLI sets this flag and none of the others.