Package ubic.gemma.core.loader.expression.singleCell.transform

Class SingleCellDataPack

java.lang.Object

ubic.gemma.core.loader.expression.singleCell.transform.AbstractScriptBasedTransformation

ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedTransformation

ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedAnnDataTransformation

ubic.gemma.core.loader.expression.singleCell.transform.SingleCellDataPack

All Implemented Interfaces:

PythonBasedSingleCellDataTransformation, SingleCellDataTransformation, SingleCellInputOutputFileTransformation

public class SingleCellDataPack
extends AbstractPythonScriptBasedAnnDataTransformation

Pack an AnnData object by removing unnecessary zeroes.

Author:

poirigui

Field Summary

Fields inherited from class ubic.gemma.core.loader.expression.singleCell.transform.AbstractScriptBasedTransformation

log

Fields inherited from interface ubic.gemma.core.loader.expression.singleCell.transform.PythonBasedSingleCellDataTransformation

DEFAULT_PYTHON_EXECUTABLE, REQUIREMENTS_FILE

Constructor Summary

Constructors

Constructor	Description
SingleCellDataPack()

Method Summary

Modifier and Type	Method	Description
String	getDescription()	Obtain a short description of what the transformation does.

Methods inherited from class ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedAnnDataTransformation

createEnvironmentVariables, createPythonScriptArgs, setInputFile, setOutputFile

Methods inherited from class ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedTransformation

createErrorMessage, createScriptArgs, isPackageInstalled, perform, setPythonExecutable

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.core.loader.expression.singleCell.transform.SingleCellDataTransformation

perform

Constructor Details

SingleCellDataPack

public SingleCellDataPack()

Method Details

getDescription

public String getDescription()

Description copied from interface: SingleCellDataTransformation

Obtain a short description of what the transformation does.