Package ubic.gemma.core.loader.expression.singleCell.transform

Class SingleCellDataPack

java.lang.Object

ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedAnnDataTransformation

ubic.gemma.core.loader.expression.singleCell.transform.SingleCellDataPack

All Implemented Interfaces:

PythonBasedSingleCellDataTransformation, SingleCellDataTransformation, SingleCellInputOutputFileTransformation

public class SingleCellDataPack
extends AbstractPythonScriptBasedAnnDataTransformation

Pack an AnnData object by removing unnecessary zeroes.

Author:

poirigui

Field Summary

Fields inherited from class ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedAnnDataTransformation

DEFAULT_PYTHON_EXECUTABLE

Constructor Summary

Constructors

Constructor	Description
SingleCellDataPack()

Method Summary

Modifier and Type	Method	Description
String	getDescription()	Obtain a short description of what the transformation does.

Methods inherited from class ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedAnnDataTransformation

createScriptArgs, isPackageInstalled, perform, setInputFile, setOutputFile, setPythonExecutable

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SingleCellDataPack

public SingleCellDataPack()

Method Details

getDescription

public String getDescription()

Description copied from interface: SingleCellDataTransformation

Obtain a short description of what the transformation does.