Class SingleCellDataPack

java.lang.Object

ubic.gemma.core.loader.expression.singleCell.transform.AbstractScriptBasedTransformation

ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedTransformation

ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedAnnDataTransformation

ubic.gemma.core.loader.expression.singleCell.transform.SingleCellDataPack

All Implemented Interfaces:

PythonBasedSingleCellDataTransformation, SingleCellDataTransformation, SingleCellInputOutputFileTransformation

public class SingleCellDataPack
extends AbstractPythonScriptBasedAnnDataTransformation

Pack an AnnData object by removing unnecessary zeroes.

Author:

poirigui

Field Summary

Fields inherited from class AbstractScriptBasedTransformation

log

Fields inherited from interface PythonBasedSingleCellDataTransformation

DEFAULT_PYTHON_EXECUTABLE, REQUIREMENTS_FILE

Constructor Summary

Constructors

Constructor	Description
SingleCellDataPack()

Method Summary

Modifier and Type	Method	Description
String	getDescription()	Obtain a short description of what the transformation does.

Methods inherited from class AbstractPythonScriptBasedAnnDataTransformation

createEnvironmentVariables, createPythonScriptArgs, setInputFile, setOutputFile

Methods inherited from class AbstractPythonScriptBasedTransformation

createErrorMessage, createScriptArgs, isPackageInstalled, perform, setPythonExecutable

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface SingleCellDataTransformation

perform

Constructor Details

SingleCellDataPack

public SingleCellDataPack()

Method Details

getDescription

public String getDescription()

Description copied from interface: SingleCellDataTransformation

Obtain a short description of what the transformation does.