Package ubic.gemma.core.loader.genome.gene.ncbi.homology

Class HomologeneFetcher

java.lang.Object

ubic.gemma.core.loader.util.fetcher.AbstractFetcher

ubic.gemma.core.loader.util.fetcher.FtpFetcher

ubic.gemma.core.loader.genome.gene.ncbi.homology.HomologeneFetcher

All Implemented Interfaces:

Fetcher

public class HomologeneFetcher
extends FtpFetcher

Grabs urls like ftp:///ftp.ncbi.nih.gov/pub/HomoloGene/current/homologene.data

Author:

klc

Field Summary

Fields inherited from class ubic.gemma.core.loader.util.fetcher.FtpFetcher

avoidDownload, ftpClient, netDataSourceUtil

Fields inherited from class ubic.gemma.core.loader.util.fetcher.AbstractFetcher

allowUseExisting, force, INFO_UPDATE_INTERVAL, localBasePath, log, remoteBaseDir

Constructor Summary

Constructors

Constructor	Description
HomologeneFetcher()

Method Summary

Modifier and Type	Method	Description
protected String	formLocalFilePath(String identifier, File newDir)
protected String	formRemoteFilePath(String identifier)
protected void	initConfig()
void	setNetDataSourceUtil()

Methods inherited from class ubic.gemma.core.loader.util.fetcher.FtpFetcher

defineTask, doTask, fetch, fetch, getExpectedSize, getNetDataSourceUtil, setAvoidDownload

Methods inherited from class ubic.gemma.core.loader.util.fetcher.AbstractFetcher

fetchedFile, fetchedFile, getExistingFile, getLocalBasePath, isForce, mkdir, mkdir, setAllowUseExisting, setForce, waitForDownload, waitForDownload

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HomologeneFetcher

public HomologeneFetcher()

Method Detail

initConfig

protected void initConfig()

Specified by:

initConfig in class AbstractFetcher

formLocalFilePath

protected String formLocalFilePath(String identifier,
                                   File newDir)

Specified by:

formLocalFilePath in class AbstractFetcher

formRemoteFilePath

protected String formRemoteFilePath(String identifier)

Specified by:

formRemoteFilePath in class AbstractFetcher

setNetDataSourceUtil

public void setNetDataSourceUtil()

Specified by:

setNetDataSourceUtil in class FtpFetcher