Package ubic.gemma.core.loader.util.anndata

Class DenseMatrix

java.lang.Object

ubic.gemma.core.loader.util.anndata.DenseMatrix

All Implemented Interfaces:

AutoCloseable, Matrix

public class DenseMatrix
extends Object
implements Matrix

Represents a dense AnnData matrix.

Author:

poirigui

Constructor Summary

Constructors

Constructor	Description
DenseMatrix(H5Dataset dataset)

Method Summary

Modifier and Type	Method	Description
void	close()	Release the underlying H5 resource for this matrix.
H5Dataset	getData()	Obtain the H5 dataset underlying this matrix.
H5Type	getDataType()	Obtain the data type used for the scalars of this matrix.
int[]	getShape()	Obtain the shape of this matrix.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DenseMatrix

public DenseMatrix(H5Dataset dataset)

Method Details

getShape

public int[] getShape()

Description copied from interface: Matrix

Obtain the shape of this matrix.

Specified by:

getShape in interface Matrix

getDataType

public H5Type getDataType()

Description copied from interface: Matrix

Obtain the data type used for the scalars of this matrix.

Specified by:

getDataType in interface Matrix

getData

public H5Dataset getData()

Description copied from interface: Matrix

Obtain the H5 dataset underlying this matrix.

Specified by:

getData in interface Matrix

close

public void close()

Description copied from interface: Matrix

Release the underlying H5 resource for this matrix.

Specified by:

close in interface AutoCloseable

Specified by:

close in interface Matrix