Class Ensembl2NcbiValueObject
- java.lang.Object
-
- ubic.gemma.core.loader.util.biomart.Ensembl2NcbiValueObject
-
- All Implemented Interfaces:
Serializable
public class Ensembl2NcbiValueObject extends Object implements Serializable
Value object that represents a file record line from BioMart as configured with query parameters. Which follows the structure: ensembleGeneId enemblTranscriptId entrez gene ensembl_peptide_id and optionally for humans hgnc_id. There is a many to many relationship between Ensembl genes ids and entrez gene. As such this value object holds a collection of entrez gene strings.- Author:
- ldonnison
- See Also:
- Serialized Form
-
-
Constructor Summary
Constructors Constructor Description Ensembl2NcbiValueObject()
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description String
getEnsemblGeneId()
String
getEnsemblPeptideId()
String
getEnsemblTranscriptId()
Collection<String>
getEntrezgenes()
String
getHgnc_id()
Integer
getNcbiTaxonId()
void
setEnsemblGeneId(String ensembleGeneId)
void
setEnsemblPeptideId(String ensemblPeptideId)
void
setEnsemblTranscriptId(String enemblTranscriptId)
void
setHgnc_id(String hgcnId)
void
setNcbiTaxonId(Integer ncbiTaxonId)
String
toString()
-
-
-
Method Detail
-
getEnsemblGeneId
public String getEnsemblGeneId()
-
setEnsemblGeneId
public void setEnsemblGeneId(String ensembleGeneId)
-
getEnsemblPeptideId
public String getEnsemblPeptideId()
-
setEnsemblPeptideId
public void setEnsemblPeptideId(String ensemblPeptideId)
-
getEnsemblTranscriptId
public String getEnsemblTranscriptId()
-
setEnsemblTranscriptId
public void setEnsemblTranscriptId(String enemblTranscriptId)
-
getEntrezgenes
public Collection<String> getEntrezgenes()
- Returns:
- Collection of strings representing entrez genes mapping to the ensemble id.
-
getHgnc_id
public String getHgnc_id()
-
setHgnc_id
public void setHgnc_id(String hgcnId)
-
getNcbiTaxonId
public Integer getNcbiTaxonId()
-
setNcbiTaxonId
public void setNcbiTaxonId(Integer ncbiTaxonId)
-
-