Package ubic.gemma.core.loader.util.biomart

Class Ensembl2NcbiValueObject

java.lang.Object
ubic.gemma.core.loader.util.biomart.Ensembl2NcbiValueObject
All Implemented Interfaces:
Serializable
public class Ensembl2NcbiValueObject extends Object implements Serializable
Value object that represents a file record line from BioMart as configured with query parameters. Which follows the structure: ensembleGeneId enemblTranscriptId entrez gene ensembl_peptide_id and optionally for humans hgnc_id. There is a many to many relationship between Ensembl genes ids and entrez gene. As such this value object holds a collection of entrez gene strings.
Author:
ldonnison
See Also:

  • Constructor Details

    • Ensembl2NcbiValueObject

      public Ensembl2NcbiValueObject()

  • Method Details

    • getEnsemblGeneId

      public String getEnsemblGeneId()

    • setEnsemblGeneId

      public void setEnsemblGeneId(String ensembleGeneId)

    • getEnsemblPeptideId

      public String getEnsemblPeptideId()

    • setEnsemblPeptideId

      public void setEnsemblPeptideId(String ensemblPeptideId)

    • getEnsemblTranscriptId

      public String getEnsemblTranscriptId()

    • setEnsemblTranscriptId

      public void setEnsemblTranscriptId(String enemblTranscriptId)

    • getEntrezgenes

      public Collection<String> getEntrezgenes()
      Returns:
      Collection of strings representing entrez genes mapping to the ensemble id.

    • getHgnc_id

      public String getHgnc_id()

    • setHgnc_id

      public void setHgnc_id(String hgcnId)

    • getNcbiTaxonId

      public Integer getNcbiTaxonId()

    • setNcbiTaxonId

      public void setNcbiTaxonId(Integer ncbiTaxonId)

    • toString

      public String toString()
      Overrides:
      toString in class Object