Class Ensembl2NcbiValueObject

  • All Implemented Interfaces:
    Serializable

    public class Ensembl2NcbiValueObject
    extends Object
    implements Serializable
    Value object that represents a file record line from BioMart as configured with query parameters. Which follows the structure: ensembleGeneId enemblTranscriptId entrez gene ensembl_peptide_id and optionally for humans hgnc_id. There is a many to many relationship between Ensembl genes ids and entrez gene. As such this value object holds a collection of entrez gene strings.
    Author:
    ldonnison
    See Also:
    Serialized Form
    • Constructor Detail

      • Ensembl2NcbiValueObject

        public Ensembl2NcbiValueObject()
    • Method Detail

      • getEnsemblGeneId

        public String getEnsemblGeneId()
      • setEnsemblGeneId

        public void setEnsemblGeneId​(String ensembleGeneId)
      • getEnsemblPeptideId

        public String getEnsemblPeptideId()
      • setEnsemblPeptideId

        public void setEnsemblPeptideId​(String ensemblPeptideId)
      • getEnsemblTranscriptId

        public String getEnsemblTranscriptId()
      • setEnsemblTranscriptId

        public void setEnsemblTranscriptId​(String enemblTranscriptId)
      • getEntrezgenes

        public Collection<String> getEntrezgenes()
        Returns:
        Collection of strings representing entrez genes mapping to the ensemble id.
      • getHgnc_id

        public String getHgnc_id()
      • setHgnc_id

        public void setHgnc_id​(String hgcnId)
      • getNcbiTaxonId

        public Integer getNcbiTaxonId()
      • setNcbiTaxonId

        public void setNcbiTaxonId​(Integer ncbiTaxonId)