Package ubic.gemma.core.loader.util.mapper

Class CellIdOverlapBioAssayMapper

java.lang.Object

ubic.gemma.core.loader.util.mapper.MapBasedEntityMapper<BioAssay>

ubic.gemma.core.loader.util.mapper.CellIdOverlapBioAssayMapper

All Implemented Interfaces:

BioAssayMapper, EntityMapper<BioAssay>

public class CellIdOverlapBioAssayMapper
extends MapBasedEntityMapper<BioAssay>
implements BioAssayMapper

Strategy for mapping sample name to BioAssay that relies on overlapping cell IDs.

Author:

poirigui

Nested Class Summary

Nested classes/interfaces inherited from interface ubic.gemma.core.loader.util.mapper.EntityMapper

EntityMapper.MappingStatistics, EntityMapper.StatefulEntityMapper<T extends Identifiable>

Constructor Summary

Constructors

Constructor	Description
CellIdOverlapBioAssayMapper(Map<BioAssay,Set<String>> bioAssayToCellIds, Map<String,Set<String>> sampleNameToCellIds)

Method Summary

Methods inherited from class ubic.gemma.core.loader.util.mapper.MapBasedEntityMapper

forCandidates, getName, processIdentifier

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.core.loader.util.mapper.BioAssayMapper

forCandidates

Methods inherited from interface ubic.gemma.core.loader.util.mapper.EntityMapper

contains, containsAny, forCandidates, getMappingStatistics, getName, matchAll, matchAll, matchOne, matchOne

Constructor Details

CellIdOverlapBioAssayMapper

public CellIdOverlapBioAssayMapper(Map<BioAssay,Set<String>> bioAssayToCellIds,
 Map<String,Set<String>> sampleNameToCellIds)