Package ubic.gemma.core.loader.util.mapper

Class SimpleBioAssayMapper

java.lang.Object

ubic.gemma.core.loader.util.mapper.AbstractBioAssayMapper

ubic.gemma.core.loader.util.mapper.SimpleBioAssayMapper

All Implemented Interfaces:

BioAssayMapper, EntityMapper<BioAssay>, HintingEntityMapper<BioAssay>

public class SimpleBioAssayMapper
extends AbstractBioAssayMapper
implements HintingEntityMapper<BioAssay>

A simple strategy for matching BioAssay to sample name.

Author:

poirigui

Nested Class Summary

Nested classes/interfaces inherited from interface ubic.gemma.core.loader.util.mapper.EntityMapper

EntityMapper.MappingStatistics, EntityMapper.StatefulEntityMapper<T extends Identifiable>

Constructor Summary

Constructors

Constructor	Description
SimpleBioAssayMapper()

Method Summary

Modifier and Type	Method	Description
List<String>	getCandidateIdentifiers(BioAssay entity)	Obtain a list of possible identifiers for the given entity from higher to lower confidence.
String	getName()	Obtain the name of the mapping strategy.
Set<BioAssay>	matchAllInternal(Collection<BioAssay> bas, String n)

Methods inherited from class ubic.gemma.core.loader.util.mapper.AbstractBioAssayMapper

contains, containsAny, forCandidates, matchAll, matchAll, matchDescriptionIgnoreCase, matchId, matchName, matchNameIgnoreCase, matchOne, matchOne, matchWithFunction, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.core.loader.util.mapper.BioAssayMapper

forCandidates

Methods inherited from interface ubic.gemma.core.loader.util.mapper.EntityMapper

contains, containsAny, forCandidates, getMappingStatistics, matchAll, matchAll, matchOne, matchOne

Constructor Detail

SimpleBioAssayMapper

public SimpleBioAssayMapper()

Method Detail

getName

public String getName()

Description copied from interface: EntityMapper

Obtain the name of the mapping strategy.

Specified by:

getName in interface EntityMapper<BioAssay>

matchAllInternal

public Set<BioAssay> matchAllInternal(Collection<BioAssay> bas,
                                      String n)

Specified by:

matchAllInternal in class AbstractBioAssayMapper

getCandidateIdentifiers

public List<String> getCandidateIdentifiers(BioAssay entity)

Description copied from interface: HintingEntityMapper

Obtain a list of possible identifiers for the given entity from higher to lower confidence.

Specified by:

getCandidateIdentifiers in interface HintingEntityMapper<BioAssay>