Class GemmaOntologyService
- java.lang.Object
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- ubic.basecode.ontology.jena.AbstractOntologyService
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- ubic.basecode.ontology.jena.AbstractOntologyMemoryBackedService
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- ubic.gemma.core.ontology.providers.GemmaOntologyService
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- All Implemented Interfaces:
OntologyService
public class GemmaOntologyService extends AbstractOntologyMemoryBackedService
Ontology created for Gemma. See bug 4312- Author:
- paul
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Nested Class Summary
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Nested classes/interfaces inherited from interface ubic.basecode.ontology.providers.OntologyService
OntologyService.InferenceMode, OntologyService.LanguageLevel
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Field Summary
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Fields inherited from class ubic.basecode.ontology.jena.AbstractOntologyService
log
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Constructor Summary
Constructors Constructor Description GemmaOntologyService()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description String
getOntologyName()
String
getOntologyUrl()
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Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyMemoryBackedService
loadModel, loadModelFromStream
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Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyService
cancelInitializationThread, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAdditionalPropertyUris, getAllURIs, getCacheName, getChildren, getDescription, getInferenceMode, getLanguageLevel, getName, getParents, getProcessImports, getResource, getTerm, getTermIndividuals, index, initialize, initialize, isEnabled, isInitializationThreadAlive, isInitializationThreadCancelled, isOntologyLoaded, isSearchEnabled, loadTermsInNameSpace, setAdditionalPropertyUris, setInferenceMode, setLanguageLevel, setProcessImports, setSearchEnabled, startInitializationThread, toString, waitForInitializationThread
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
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Methods inherited from interface ubic.basecode.ontology.providers.OntologyService
findIndividuals, findResources, findTerm, getChildren, getParents
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Method Detail
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getOntologyName
public String getOntologyName()
- Specified by:
getOntologyName
in classAbstractOntologyService
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getOntologyUrl
public String getOntologyUrl()
- Overrides:
getOntologyUrl
in classAbstractOntologyMemoryBackedService
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