Package ubic.gemma.core.search

Interface SearchService

All Known Implementing Classes:

SearchServiceImpl

public interface SearchService

Author:

paul

Nested Class Summary

Nested Classes

Modifier and Type	Interface	Description
static interface	SearchService.SearchResultMap

Method Summary

Modifier and Type	Method	Description
Set<String>	getFields(Class<? extends Identifiable> resultType)	Obtain a list of fields that can be searched on for the given result type.
Set<Class<? extends Identifiable>>	getSupportedResultTypes()	Returns a set of supported result types.
<T extends Identifiable, U extends IdentifiableValueObject<T>> SearchResult<U>	loadValueObject(SearchResult<T> searchResult)	Convert a SearchResult to its VO flavour.
List<SearchResult<? extends IdentifiableValueObject<?>>>	loadValueObjects(Collection<SearchResult<?>> searchResults)	Convert a collection of SearchResult to their VO flavours.
SearchService.SearchResultMap	search(SearchSettings settings)
SearchService.SearchResultMap	search(SearchSettings settings, SearchContext context)	The results are sorted in order of decreasing score, organized by class.

Method Details

getFields

Set<String> getFields(Class<? extends Identifiable> resultType)

Obtain a list of fields that can be searched on for the given result type.

search

SearchService.SearchResultMap search(SearchSettings settings,
 SearchContext context)
                              throws SearchException

The results are sorted in order of decreasing score, organized by class. The following objects can be searched for, depending on the configuration of the input object.

• Genes
• ExpressionExperiments
• CompositeSequences (probes)
• ArrayDesigns (platforms)
• Characteristics (e.g., Ontology annotations)
• BioSequences
• BibliographicReferences (articles)

Parameters:

settings - settings

context -

Returns:

Map of Class to SearchResults. The results are already filtered for security considerations.

Throws:

SearchException

search

SearchService.SearchResultMap search(SearchSettings settings)
                              throws SearchException

Throws:

SearchException

getSupportedResultTypes

Set<Class<? extends Identifiable>> getSupportedResultTypes()

Returns a set of supported result types.

This is mainly used to perform a search for everything via

invalid reference

SearchSettings#getResultTypes()

.

loadValueObject

<T extends Identifiable,
U extends IdentifiableValueObject<T>>
SearchResult<U> loadValueObject(SearchResult<T> searchResult)
                         throws IllegalArgumentException

Convert a SearchResult to its VO flavour.

The resulting search result preserve the result ID, score and highlighted text, and

invalid reference

SearchResult#getResultType()

, but sees its

invalid reference

SearchResult#getResultObject()

transformed.

The conversion logic is mainly defined by the corresponding BaseVoEnabledService that match the result type. See getSupportedResultTypes() for a set of supported result types this o function can handle.

Throws:

IllegalArgumentException - if the passed search result is not supported for VO conversion

loadValueObjects

List<SearchResult<? extends IdentifiableValueObject<?>>> loadValueObjects(Collection<SearchResult<?>> searchResults)
                                                                   throws IllegalArgumentException

Convert a collection of SearchResult to their VO flavours.

Note that since the results might contain a mixture of different result types, the implementation can take advantage of grouping result by types in order to use BaseVoEnabledService.loadValueObjects(Collection), which is generally more efficient than loading each result individually.

Parameters:

searchResults - a collection of SearchResult, which may contain a mixture of different Identifiable result objects

Returns:

converted search results as per loadValueObject(SearchResult)

Throws:

IllegalArgumentException - if any of the supplied search results cannot be converted to VO

See Also:

• BaseVoEnabledService.loadValueObjects(Collection)