Package ubic.gemma.core.tasks.analysis.coexp

Class LinkAnalysisTaskCommand

java.lang.Object

ubic.gemma.core.job.TaskCommand

ubic.gemma.core.tasks.analysis.coexp.LinkAnalysisTaskCommand

All Implemented Interfaces:

Serializable

public class LinkAnalysisTaskCommand
extends TaskCommand

Command object for Link analysis

Author:

Paul

See Also:

• Serialized Form

Field Summary

Fields inherited from class ubic.gemma.core.job.TaskCommand

MAX_QUEUING_MILLIS, MAX_RUNTIME_MILLIS

Constructor Summary

Constructors

Constructor	Description
LinkAnalysisTaskCommand(ExpressionExperiment ee, LinkAnalysisConfig lac, ExpressionExperimentFilterConfig fg)

Method Summary

Modifier and Type	Method	Description
ExpressionExperiment	getExpressionExperiment()
ExpressionExperimentFilterConfig	getFilterConfig()
LinkAnalysisConfig	getLinkAnalysisConfig()
Class<? extends Task<? extends TaskCommand>>	getTaskClass()	Obtain the class of the Task object that will be run for this command.
void	setExpressionExperiment(ExpressionExperiment expressionExperiment)

Methods inherited from class ubic.gemma.core.job.TaskCommand

getMaxQueueMillis, getMaxRuntimeMillis, getPersistJobDetails, getSecurityContext, getSubmitter, isEmailAlert, setEmailAlert, setMaxQueueMillis, setMaxRuntimeMillis, setPersistJobDetails

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

LinkAnalysisTaskCommand

public LinkAnalysisTaskCommand(ExpressionExperiment ee,
 LinkAnalysisConfig lac,
 ExpressionExperimentFilterConfig fg)

Method Details

getExpressionExperiment

public ExpressionExperiment getExpressionExperiment()

setExpressionExperiment

public void setExpressionExperiment(ExpressionExperiment expressionExperiment)

getFilterConfig

public ExpressionExperimentFilterConfig getFilterConfig()

getLinkAnalysisConfig

public LinkAnalysisConfig getLinkAnalysisConfig()

getTaskClass

public Class<? extends Task<? extends TaskCommand>> getTaskClass()

Description copied from class: TaskCommand

Obtain the class of the Task object that will be run for this command.

If null, the task command cannot be submitted through TaskRunningService.submitTaskCommand(TaskCommand) and a task object must be explicitly created.

For now, this how we map from TaskCommand to Task that actually runs it. We have to have this mapping somewhere until we make Tasks themselves serializable. Tasks are not readily serializable because they have dependencies to Spring services. at which point TaskCommand can be deprecated(or remain as TaskContext).

Overrides:

getTaskClass in class TaskCommand