Package ubic.gemma.core.tasks.analysis.expression

Class ExpressionExperimentLoadTaskCommand

java.lang.Object

ubic.gemma.core.job.TaskCommand

ubic.gemma.core.tasks.analysis.expression.ExpressionExperimentLoadTaskCommand

All Implemented Interfaces:

Serializable

public class ExpressionExperimentLoadTaskCommand
extends TaskCommand

Author:

keshav

See Also:

• Serialized Form

Field Summary

Fields inherited from class ubic.gemma.core.job.TaskCommand

MAX_QUEUING_MILLIS, MAX_RUNTIME_MILLIS

Constructor Summary

Constructors

Constructor	Description
ExpressionExperimentLoadTaskCommand()
ExpressionExperimentLoadTaskCommand(boolean loadPlatformOnly, boolean suppressMatching, String accession, boolean aggressiveQtRemoval, boolean isArrayExpress, String arrayDesignName)

Method Summary

Modifier and Type	Method	Description
String	getAccession()
String	getArrayDesignName()
Class<? extends Task<? extends TaskCommand>>	getTaskClass()	Obtain the class of the Task object that will be run for this command.
boolean	isAggressiveQtRemoval()
boolean	isAllowArrayExpressDesign()
protected boolean	isAllowSubSeriesLoad()
boolean	isAllowSuperSeriesLoad()
boolean	isArrayExpress()
boolean	isLoadPlatformOnly()
boolean	isSplitByPlatform()
boolean	isSuppressMatching()
void	setAccession(String accession)
void	setAggressiveQtRemoval(boolean aggressiveQtRemoval)
void	setAllowArrayExpressDesign(boolean allowArrayExpressDesign)
protected void	setAllowSubSeriesLoad(boolean allowSubSeriesLoad)
void	setAllowSuperSeriesLoad(boolean allowSuperSeriesLoad)
void	setArrayDesignName(String arrayDesignName)
void	setArrayExpress(boolean isArrayExpress)
void	setLoadPlatformOnly(boolean loadPlatformOnly)
void	setSplitByPlatform(boolean isSplitByPlatform)
void	setSuppressMatching(boolean suppressMatching)

Methods inherited from class ubic.gemma.core.job.TaskCommand

getMaxQueueMillis, getMaxRuntimeMillis, getPersistJobDetails, getSecurityContext, getSubmitter, isEmailAlert, setEmailAlert, setMaxQueueMillis, setMaxRuntimeMillis, setPersistJobDetails

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ExpressionExperimentLoadTaskCommand

public ExpressionExperimentLoadTaskCommand()

ExpressionExperimentLoadTaskCommand

public ExpressionExperimentLoadTaskCommand(boolean loadPlatformOnly,
 boolean suppressMatching,
 String accession,
 boolean aggressiveQtRemoval,
 boolean isArrayExpress,
 String arrayDesignName)

Method Details

getAccession

public String getAccession()

setAccession

public void setAccession(String accession)

getArrayDesignName

public String getArrayDesignName()

setArrayDesignName

public void setArrayDesignName(String arrayDesignName)

getTaskClass

public Class<? extends Task<? extends TaskCommand>> getTaskClass()

Description copied from class: TaskCommand

Obtain the class of the Task object that will be run for this command.

If null, the task command cannot be submitted through TaskRunningService.submitTaskCommand(TaskCommand) and a task object must be explicitly created.

For now, this how we map from TaskCommand to Task that actually runs it. We have to have this mapping somewhere until we make Tasks themselves serializable. Tasks are not readily serializable because they have dependencies to Spring services. at which point TaskCommand can be deprecated(or remain as TaskContext).

Overrides:

getTaskClass in class TaskCommand

isAggressiveQtRemoval

public boolean isAggressiveQtRemoval()

setAggressiveQtRemoval

public void setAggressiveQtRemoval(boolean aggressiveQtRemoval)

isAllowArrayExpressDesign

public boolean isAllowArrayExpressDesign()

Returns:

the allowArrayExpressDesign

setAllowArrayExpressDesign

public void setAllowArrayExpressDesign(boolean allowArrayExpressDesign)

Parameters:

allowArrayExpressDesign - the allowArrayExpressDesign to set

isAllowSuperSeriesLoad

public boolean isAllowSuperSeriesLoad()

setAllowSuperSeriesLoad

public void setAllowSuperSeriesLoad(boolean allowSuperSeriesLoad)

Parameters:

allowSuperSeriesLoad - the allowSuperSeriesLoad to set

isArrayExpress

public boolean isArrayExpress()

setArrayExpress

public void setArrayExpress(boolean isArrayExpress)

isLoadPlatformOnly

public boolean isLoadPlatformOnly()

setLoadPlatformOnly

public void setLoadPlatformOnly(boolean loadPlatformOnly)

isSplitByPlatform

public boolean isSplitByPlatform()

setSplitByPlatform

public void setSplitByPlatform(boolean isSplitByPlatform)

isSuppressMatching

public boolean isSuppressMatching()

setSuppressMatching

public void setSuppressMatching(boolean suppressMatching)

isAllowSubSeriesLoad

protected boolean isAllowSubSeriesLoad()

setAllowSubSeriesLoad

protected void setAllowSubSeriesLoad(boolean allowSubSeriesLoad)