PreprocessTaskCommand (Gemma 1.32.0 API)

java.lang.Object
- ubic.gemma.core.job.TaskCommand
- - ubic.gemma.core.tasks.analysis.expression.PreprocessTaskCommand

All Implemented Interfaces:

Serializable
```
public class PreprocessTaskCommand
extends TaskCommand
```
Command object for processing data vectors. Has dual purpose for updating the correlation matrices.

Author:

keshav

See Also:

Serialized Form

Field Summary
- Fields inherited from class ubic.gemma.core.job.TaskCommand
  MAX_QUEUING_MILLIS, MAX_RUNTIME_MILLIS

Constructor Summary

Constructors
Constructor Description

PreprocessTaskCommand(ExpressionExperiment ee)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`diagnosticsOnly()`
`ExpressionExperiment`	`getExpressionExperiment()`
`Class<? extends Task<? extends TaskCommand>>`	`getTaskClass()`	Obtain the class of the `Task` object that will be run for this command.
`void`	`setDiagnosticsOnly(boolean diagnosticsOnly)`	If true, we'll try to just update the diagnostics (M-V, PCA and sample correlation)
`void`	`setExpressionExperiment(ExpressionExperiment expressionExperiment)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - PreprocessTaskCommand
```
public PreprocessTaskCommand(ExpressionExperiment ee)
```
- Method Detail
  - getExpressionExperiment
```
public ExpressionExperiment getExpressionExperiment()
```
  - setExpressionExperiment
```
public void setExpressionExperiment(ExpressionExperiment expressionExperiment)
```
  - getTaskClass
```
public Class<? extends Task<? extends TaskCommand>> getTaskClass()
```
    Description copied from class: TaskCommand
    
    Obtain the class of the Task object that will be run for this command.
    If null, the task command cannot be submitted through TaskRunningService.submitTaskCommand(TaskCommand) and a task object must be explicitly created.
    For now, this how we map from TaskCommand to Task that actually runs it. We have to have this mapping somewhere until we make Tasks themselves serializable. Tasks are not readily serializable because they have dependencies to Spring services. at which point TaskCommand can be deprecated(or remain as TaskContext).
    
    Overrides:
    
    getTaskClass in class TaskCommand
  - diagnosticsOnly
```
public boolean diagnosticsOnly()
```
  - setDiagnosticsOnly
```
public void setDiagnosticsOnly(boolean diagnosticsOnly)
```
    If true, we'll try to just update the diagnostics (M-V, PCA and sample correlation)
    
    Parameters:
    
    diagnosticsOnly - whether to only update the diagnostics