Package ubic.gemma.core.tasks.analysis.expression

Class TwoChannelMissingValueTaskCommand

java.lang.Object

ubic.gemma.core.job.TaskCommand

ubic.gemma.core.tasks.analysis.expression.TwoChannelMissingValueTaskCommand

All Implemented Interfaces:

Serializable

public class TwoChannelMissingValueTaskCommand
extends TaskCommand

Author:

paul

See Also:

• Serialized Form

Field Summary

Fields inherited from class ubic.gemma.core.job.TaskCommand

MAX_QUEUING_MILLIS, MAX_RUNTIME_MILLIS

Constructor Summary

Constructors

Constructor	Description
TwoChannelMissingValueTaskCommand(ExpressionExperiment ee)
TwoChannelMissingValueTaskCommand(ExpressionExperiment expressionExperiment, double s2n, Collection<Double> extraMissingValueIndictors)

Method Summary

Modifier and Type	Method	Description
ExpressionExperiment	getExpressionExperiment()
Collection<Double>	getExtraMissingValueIndicators()
double	getS2n()
Class<? extends Task<? extends TaskCommand>>	getTaskClass()	Obtain the class of the Task object that will be run for this command.
void	setExpressionExperiment(ExpressionExperiment expressionExperiment)
void	setExtraMissingValueIndicators(Collection<Double> extraMissingValueIndicators)
void	setS2n(double s2n)

Methods inherited from class ubic.gemma.core.job.TaskCommand

getMaxQueueMillis, getMaxRuntimeMillis, getPersistJobDetails, getSecurityContext, getSubmitter, isEmailAlert, setEmailAlert, setMaxQueueMillis, setMaxRuntimeMillis, setPersistJobDetails

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

TwoChannelMissingValueTaskCommand

public TwoChannelMissingValueTaskCommand(ExpressionExperiment ee)

TwoChannelMissingValueTaskCommand

public TwoChannelMissingValueTaskCommand(ExpressionExperiment expressionExperiment,
 double s2n,
 Collection<Double> extraMissingValueIndictors)

Parameters:

expressionExperiment - experiment

s2n - s2n

extraMissingValueIndictors - extra missing values indicators

See Also:

• for parameterization details.

Method Details

getExpressionExperiment

public ExpressionExperiment getExpressionExperiment()

setExpressionExperiment

public void setExpressionExperiment(ExpressionExperiment expressionExperiment)

getExtraMissingValueIndicators

public Collection<Double> getExtraMissingValueIndicators()

Returns:

the extraMissingValueIndicators

setExtraMissingValueIndicators

public void setExtraMissingValueIndicators(Collection<Double> extraMissingValueIndicators)

Parameters:

extraMissingValueIndicators - the extraMissingValueIndicators to set

getS2n

public double getS2n()

Returns:

the s2n

setS2n

public void setS2n(double s2n)

Parameters:

s2n - the s2n to set

getTaskClass

public Class<? extends Task<? extends TaskCommand>> getTaskClass()

Description copied from class: TaskCommand

Obtain the class of the Task object that will be run for this command.

If null, the task command cannot be submitted through TaskRunningService.submitTaskCommand(TaskCommand) and a task object must be explicitly created.

For now, this how we map from TaskCommand to Task that actually runs it. We have to have this mapping somewhere until we make Tasks themselves serializable. Tasks are not readily serializable because they have dependencies to Spring services. at which point TaskCommand can be deprecated(or remain as TaskContext).

Overrides:

getTaskClass in class TaskCommand