Package ubic.gemma.core.tasks.maintenance

Class IndexerTaskCommand

java.lang.Object

ubic.gemma.core.job.TaskCommand

ubic.gemma.core.tasks.maintenance.IndexerTaskCommand

All Implemented Interfaces:

Serializable

public class IndexerTaskCommand
extends TaskCommand

Author:

klc

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.gemma.core.job.TaskCommand

MAX_QUEUING_MINUTES, MAX_RUNTIME_MINUTES

Constructor Summary

Constructors

Constructor	Description
IndexerTaskCommand()

Method Summary

Modifier and Type	Method	Description
Class<?>	getTaskClass()
boolean	isCompassOn()
boolean	isIndexAD()
boolean	isIndexBibRef()
boolean	isIndexBioSequence()
boolean	isIndexEE()
boolean	isIndexExperimentSet()
boolean	isIndexGene()
boolean	isIndexGeneSet()
boolean	isIndexOntologies()
boolean	isIndexProbe()
void	setAll(boolean all)	Indexing of probes and BioSequences sometimes bails because of the size of the index created.
void	setCompassOn(boolean compassOn)
void	setIndexAD(boolean indexAD)
void	setIndexBibRef(boolean indexBibRef)
void	setIndexBioSequence(boolean indexBioSequence)
void	setIndexEE(boolean indexEE)
void	setIndexExperimentSet(boolean indexExperimentSet)
void	setIndexGene(boolean indexGene)
void	setIndexGeneSet(boolean indexGeneSet)
void	setIndexOntologies(boolean indexOntologies)
void	setIndexOntology(boolean indexBioSequence)
void	setIndexProbe(boolean indexProbe)

Methods inherited from class ubic.gemma.core.job.TaskCommand

getEntityId, getMaxQueueMinutes, getMaxRuntime, getPersistJobDetails, getSecurityContext, getSubmitter, getTaskId, isEmailAlert, setEmailAlert, setEntityId, setMaxQueueMinutes, setMaxRuntime, setPersistJobDetails, setTaskId

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IndexerTaskCommand

public IndexerTaskCommand()

Method Detail

getTaskClass

public Class<?> getTaskClass()

Overrides:

getTaskClass in class TaskCommand

isCompassOn

public boolean isCompassOn()

setCompassOn

public void setCompassOn(boolean compassOn)

isIndexAD

public boolean isIndexAD()

setIndexAD

public void setIndexAD(boolean indexAD)

isIndexBibRef

public boolean isIndexBibRef()

setIndexBibRef

public void setIndexBibRef(boolean indexBibRef)

isIndexBioSequence

public boolean isIndexBioSequence()

setIndexBioSequence

public void setIndexBioSequence(boolean indexBioSequence)

isIndexEE

public boolean isIndexEE()

setIndexEE

public void setIndexEE(boolean indexEE)

isIndexExperimentSet

public boolean isIndexExperimentSet()

Returns:

the indexExperimentSet

setIndexExperimentSet

public void setIndexExperimentSet(boolean indexExperimentSet)

Parameters:

indexExperimentSet - the indexExperimentSet to set

isIndexGene

public boolean isIndexGene()

setIndexGene

public void setIndexGene(boolean indexGene)

isIndexGeneSet

public boolean isIndexGeneSet()

Returns:

the indexGeneSet

setIndexGeneSet

public void setIndexGeneSet(boolean indexGeneSet)

Parameters:

indexGeneSet - the indexGeneSet to set

isIndexOntologies

public boolean isIndexOntologies()

setIndexOntologies

public void setIndexOntologies(boolean indexOntologies)

isIndexProbe

public boolean isIndexProbe()

setIndexProbe

public void setIndexProbe(boolean indexProbe)

setAll

public void setAll(boolean all)

Indexing of probes and BioSequences sometimes bails because of the size of the index created. Also their data rarely changes so there is not much value in indexing it every week. Indexing of probes and biosequences can still be triggered manually.

Parameters:

all - all

setIndexOntology

public void setIndexOntology(boolean indexBioSequence)