Uses of Interface
ubic.gemma.core.util.matrix.Matrix2D

Packages that use Matrix2D

Package	Description
ubic.gemma.core.util.matrix	Labelled-axis matrix types ported in-tree from baseCode's ubic.basecode.dataStructure.matrix subsystem as part of the Phase 3 baseCode retirement (see BASECODE_MATRIX_RECCE.md and BASECODE_DEP_AUDIT.md).
ubic.gemma.core.util.matrix.datafilter

Uses of Matrix2D in ubic.gemma.core.util.matrix

Classes in ubic.gemma.core.util.matrix with type parameters of type Matrix2D

Modifier and Type	Class	Description
class	AbstractMatrixReader<M extends Matrix2D<String,String,V>, V>	Abstract class representing an object that can read in a Matrix2D from a file.

Subinterfaces of Matrix2D in ubic.gemma.core.util.matrix

Modifier and Type	Interface	Description
interface	ObjectMatrix<R,C,V>
interface	PrimitiveMatrix<R,C,V>	Matrix that holds primitives, with an available object representation of the values.

Classes in ubic.gemma.core.util.matrix that implement Matrix2D

Modifier and Type	Class	Description
class	AbstractMatrix<R,C,V>
class	CompressedSparseDoubleMatrix<R,C>	Supports sparse matrices (where sparse means most values are zero, not that they are missing).
class	DenseDoubleMatrix<R,C>	A dense matrix of doubles that knows about row and column names.
class	DoubleMatrix<R,C>	Abstract base class for 2D matrices of double values with named columns and rows.
class	FastRowAccessDoubleMatrix<R,C>	Dense 2D matrix implementation designed for very fast access of entire rows.
class	IntegerMatrix<R,C>
class	ObjectMatrixImpl<R,C,V>	Matrix that can hold any type of object
class	SparseDoubleMatrix<R,C>	A sparse matrix that knows about row and column names.
class	StringMatrix<R,C>	A NamedMatrix containing String objects.

Methods in ubic.gemma.core.util.matrix with parameters of type Matrix2D

Modifier and Type	Method	Description
static <R,C,V> V	MatrixUtil.getObject(Matrix2D<R,C,V> matrix, int rowIndex, int colIndex)
static <R,C,V> V[]	MatrixUtil.getRow(Matrix2D<R,C,V> matrix, int rowIndex)
<V> void	MatrixWriter.writeMatrix(Matrix2D<R,C,V> matrix, boolean printNames)

Uses of Matrix2D in ubic.gemma.core.util.matrix.datafilter

Classes in ubic.gemma.core.util.matrix.datafilter with type parameters of type Matrix2D

Modifier and Type	Class	Description
class	AbstractFilter<M extends Matrix2D<R,C,V>, R, C, V>	Base implementation of the filter interface.
interface	Filter<M extends Matrix2D<R,C,V>, R, C, V>	An interface representing the functionality of a class that can filter 2-d matrix-based data by row-oriented criteria.
class	RowMissingFilter<M extends Matrix2D<R,C,V>, R, C, V>	Remove rows from a matrix that are missing too many points.