Package ubic.gemma.core.visualization

Class SingleCellDataBoxplot

java.lang.Object

ubic.gemma.core.visualization.SingleCellDataBoxplot

public class SingleCellDataBoxplot
extends Object

Represents a boxplot(s) of single-cell data.

Constructor Summary

Constructors

Constructor	Description
SingleCellDataBoxplot(SingleCellExpressionDataVector vector)

Method Summary

Modifier and Type	Method	Description
Collection<org.jfree.chart.annotations.CategoryAnnotation>	createAnnotations()	Obtain annotations to include in the plot.
org.jfree.data.statistics.BoxAndWhiskerCategoryDataset	createDataset()	Create a dataset.
int	getNumberOfBoxplots()	Obtain the number of boxplots that would be displayed.
void	setBioAssays(List<BioAssay> bioAssays)
void	setCellLevelCharacteristics(CellLevelCharacteristics cellLevelCharacteristics)
void	setFocusedCharacteristic(Characteristic focusedCharacteristic)
void	setShowMean(boolean showMean)	Whether to show the mean.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SingleCellDataBoxplot

public SingleCellDataBoxplot(SingleCellExpressionDataVector vector)

Method Details

createDataset

public org.jfree.data.statistics.BoxAndWhiskerCategoryDataset createDataset()

Create a dataset.

createAnnotations

public Collection<org.jfree.chart.annotations.CategoryAnnotation> createAnnotations()

Obtain annotations to include in the plot.

getNumberOfBoxplots

public int getNumberOfBoxplots()

Obtain the number of boxplots that would be displayed.

setBioAssays

public void setBioAssays(List<BioAssay> bioAssays)

setCellLevelCharacteristics

public void setCellLevelCharacteristics(@Nullable
 CellLevelCharacteristics cellLevelCharacteristics)

setFocusedCharacteristic

public void setFocusedCharacteristic(@Nullable
 Characteristic focusedCharacteristic)

setShowMean

public void setShowMean(boolean showMean)

Whether to show the mean.