Package ubic.gemma.model.analysis.expression

Class ExpressionExperimentSet

java.lang.Object

ubic.gemma.model.common.AbstractIdentifiable

ubic.gemma.model.common.AbstractDescribable

ubic.gemma.model.common.auditAndSecurity.AbstractAuditable

ubic.gemma.model.analysis.expression.ExpressionExperimentSet

All Implemented Interfaces:

gemma.gsec.model.Securable, Auditable, Securable, Describable, Identifiable

@Indexed
public class ExpressionExperimentSet
extends AbstractAuditable
implements Securable

A grouping of expression studies.

Author:

Paul

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static final class	ExpressionExperimentSet.Factory

Constructor Summary

Constructors

Constructor	Description
ExpressionExperimentSet()	No-arg constructor added to satisfy javabean contract

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object object)	Important note: The name should be compared in a case-insensitive manner.
DatabaseEntry	getAccession()
String	getDescription()	Obtain a human-readable description of the object
Set<ExpressionExperiment>	getExperiments()
Long	getId()	Obtain the identifier of the object.
String	getName()	Obtain the name of the object.
Taxon	getTaxon()
void	setAccession(DatabaseEntry accession)
void	setExperiments(Set<ExpressionExperiment> experiments)
void	setTaxon(Taxon taxon)

Methods inherited from class ubic.gemma.model.common.auditAndSecurity.AbstractAuditable

getAuditTrail, setAuditTrail

Methods inherited from class ubic.gemma.model.common.AbstractDescribable

hashCode, setDescription, setName, toString

Methods inherited from class ubic.gemma.model.common.AbstractIdentifiable

setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

ExpressionExperimentSet

public ExpressionExperimentSet()

No-arg constructor added to satisfy javabean contract

Method Details

getId

@DocumentId
public Long getId()

Description copied from interface: Identifiable

Obtain the identifier of the object.

Specified by:

getId in interface Identifiable

Specified by:

getId in interface gemma.gsec.model.Securable

Overrides:

getId in class AbstractIdentifiable

equals

public boolean equals(Object object)

Description copied from class: AbstractDescribable

Important note: The name should be compared in a case-insensitive manner. You can use DescribableUtils.equalsByName(Describable, Describable) to get the correct behavior.

Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.

Specified by:

equals in class AbstractDescribable

getName

@Field
public String getName()

Description copied from interface: Describable

Obtain the name of the object.

It may be human-readable.

It is case-insensitive and usually unique within a certain context (e.g. in a collection).

It is non-null by default, but implementation may override this with a Nullable annotation. If null, it should not be treated as equal to other Describable objects (i.e. there can be multiple null-named describable within a given set).

Specified by:

getName in interface Describable

Overrides:

getName in class AbstractDescribable

getDescription

@Field(store=YES)
public String getDescription()

Description copied from interface: Describable

Obtain a human-readable description of the object

Specified by:

getDescription in interface Describable

Overrides:

getDescription in class AbstractDescribable

getAccession

@Nullable
@IndexedEmbedded
public DatabaseEntry getAccession()

setAccession

public void setAccession(@Nullable
 DatabaseEntry accession)

getExperiments

public Set<ExpressionExperiment> getExperiments()

setExperiments

public void setExperiments(Set<ExpressionExperiment> experiments)

getTaxon

public Taxon getTaxon()

setTaxon

public void setTaxon(Taxon taxon)