Uses of Enum Class
ubic.gemma.model.common.auditAndSecurity.curation.AnnotationSetRole

Packages that use AnnotationSetRole

Package	Description
ubic.gemma.model.common.auditAndSecurity.curation
ubic.gemma.persistence.service.common.auditAndSecurity.curation

Uses of AnnotationSetRole in ubic.gemma.model.common.auditAndSecurity.curation

Subclasses with type arguments of type AnnotationSetRole in ubic.gemma.model.common.auditAndSecurity.curation

Modifier and Type	Class	Description
enum	AnnotationSetRole	Role discriminator on AnnotationSet rows.

Methods in ubic.gemma.model.common.auditAndSecurity.curation that return AnnotationSetRole

Modifier and Type	Method	Description
static AnnotationSetRole	AnnotationSetRole.fromDbValue(String v)	Parse the lowercase external form back into the enum.
AnnotationSetRole	AnnotationSet.getRole()
AnnotationSetRole	AnnotationSetSummaryValueObject.getRole()
static AnnotationSetRole	AnnotationSetRole.valueOf(String name)	Returns the enum constant of this class with the specified name.
static AnnotationSetRole[]	AnnotationSetRole.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods in ubic.gemma.model.common.auditAndSecurity.curation with parameters of type AnnotationSetRole

Modifier and Type	Method	Description
void	AnnotationSet.setRole(AnnotationSetRole role)
void	AnnotationSetSummaryValueObject.setRole(AnnotationSetRole role)

Constructors in ubic.gemma.model.common.auditAndSecurity.curation with parameters of type AnnotationSetRole

Modifier	Constructor	Description
	AnnotationSetSummaryValueObject(Long id, AnnotationSetRole role, AnnotationSetSource source, AgentCurationKind kind, String runId, String createdBy, Date createdAt, Date updatedAt, Date finalizedAt, String finalizedBy, String agentVersion, String model, String runSha, String agentName, Date ranAt, Long investigationId, Long parentId, Long payloadSize, String status, Integer factorCount, Integer tagCount, String datasetShortName)	Projection constructor used by the HQL SELECT NEW ... query in AnnotationSetDaoImpl.

Uses of AnnotationSetRole in ubic.gemma.persistence.service.common.auditAndSecurity.curation

Methods in ubic.gemma.persistence.service.common.auditAndSecurity.curation that return types with arguments of type AnnotationSetRole

Modifier and Type	Method	Description
Map<AnnotationSetRole, Long>	AnnotationSetDao.countByRoleSince(Date since)	Group rows by role, counting per bucket.
Map<AnnotationSetRole, Long>	AnnotationSetDaoImpl.countByRoleSince(Date since)
Map<AnnotationSetRole, Long>	AnnotationSetService.countByRoleSince(Date since)
Map<AnnotationSetRole, Long>	AnnotationSetServiceImpl.countByRoleSince(Date since)

Methods in ubic.gemma.persistence.service.common.auditAndSecurity.curation with parameters of type AnnotationSetRole

Modifier and Type	Method	Description
AnnotationSetService.AttachedAnnotationSet	AnnotationSetService.attach(Investigation investigation, AnnotationSetRole role, AnnotationSetSource source, AgentCurationKind kind, String runId, String createdBy, String agentVersion, String model, Date ranAt, String payloadJson, AnnotationSet parent)	Attach (or return existing) an annotation set to the given investigation.
AnnotationSetService.AttachedAnnotationSet	AnnotationSetService.attach(Investigation investigation, AnnotationSetRole role, AnnotationSetSource source, AgentCurationKind kind, String runId, String createdBy, AnnotationSetService.RunProvenance runProvenance, String payloadJson, AnnotationSet parent)	As AnnotationSetService.attach(Investigation, AnnotationSetRole, AnnotationSetSource, AgentCurationKind, String, String, String, String, Date, String, AnnotationSet), but carrying the full run provenance rather than the agentVersion / model / ranAt triple.
AnnotationSetService.AttachedAnnotationSet	AnnotationSetServiceImpl.attach(Investigation investigation, AnnotationSetRole role, AnnotationSetSource source, AgentCurationKind kind, String runId, String createdBy, String agentVersion, String model, Date ranAt, String payloadJson, AnnotationSet parent)
AnnotationSetService.AttachedAnnotationSet	AnnotationSetServiceImpl.attach(Investigation investigation, AnnotationSetRole role, AnnotationSetSource source, AgentCurationKind kind, String runId, String createdBy, AnnotationSetService.RunProvenance runProvenance, String payloadJson, AnnotationSet parent)
long	AnnotationSetDao.countByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)	Count rows attached to the given investigation matching the role filter (or all roles if null).
long	AnnotationSetDaoImpl.countByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)
long	AnnotationSetService.countByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)
long	AnnotationSetServiceImpl.countByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)
long	AnnotationSetDao.countDistinctRunIdsSince(Date since, AnnotationSetRole roleFilter)	Number of distinct runIds seen on rows with createdAt >= since (or all-time if null).
long	AnnotationSetDaoImpl.countDistinctRunIdsSince(Date since, AnnotationSetRole roleFilter)
long	AnnotationSetService.countDistinctRunIdsSince(Date since, AnnotationSetRole roleFilter)
long	AnnotationSetServiceImpl.countDistinctRunIdsSince(Date since, AnnotationSetRole roleFilter)
long	AnnotationSetDao.countSince(Date since, AnnotationSetRole roleFilter)	Count rows with createdAt on or after since (or all rows if since is null).
long	AnnotationSetDaoImpl.countSince(Date since, AnnotationSetRole roleFilter)
long	AnnotationSetService.countSince(Date since, AnnotationSetRole roleFilter)
long	AnnotationSetServiceImpl.countSince(Date since, AnnotationSetRole roleFilter)
long	AnnotationSetDao.countSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds)	Cross-experiment count.
long	AnnotationSetDaoImpl.countSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds)
long	AnnotationSetService.countSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds)
long	AnnotationSetServiceImpl.countSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds)
List<AnnotationSet>	AnnotationSetDao.findByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)	All sets attached to the given investigation, newest first.
List<AnnotationSet>	AnnotationSetDaoImpl.findByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)
List<AnnotationSet>	AnnotationSetService.findByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)
List<AnnotationSet>	AnnotationSetServiceImpl.findByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)
AnnotationSet	AnnotationSetDao.findByInvestigationAndRoleAndRunId(Investigation investigation, AnnotationSetRole role, String runId)	Find an existing row for the (investigation, role, runId) triple, or null.
AnnotationSet	AnnotationSetDaoImpl.findByInvestigationAndRoleAndRunId(Investigation investigation, AnnotationSetRole role, String runId)
AnnotationSet	AnnotationSetService.findByInvestigationAndRoleAndRunId(Investigation investigation, AnnotationSetRole role, String runId)
AnnotationSet	AnnotationSetServiceImpl.findByInvestigationAndRoleAndRunId(Investigation investigation, AnnotationSetRole role, String runId)
AnnotationSet	AnnotationSetDao.findLatestByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)	The most recent set attached to the given investigation matching the role filter (or all roles if null), or null.
AnnotationSet	AnnotationSetDaoImpl.findLatestByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)
AnnotationSet	AnnotationSetService.findLatestByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)
AnnotationSet	AnnotationSetServiceImpl.findLatestByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)
Date	AnnotationSetDao.findLatestCreatedAt(AnnotationSetRole roleFilter)
Date	AnnotationSetDaoImpl.findLatestCreatedAt(AnnotationSetRole roleFilter)
Date	AnnotationSetService.findLatestCreatedAt(AnnotationSetRole roleFilter)
Date	AnnotationSetServiceImpl.findLatestCreatedAt(AnnotationSetRole roleFilter)
List<AnnotationSetSummaryValueObject>	AnnotationSetDao.findSummariesByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)	Thin metadata projection of sets attached to the given investigation, newest first.
List<AnnotationSetSummaryValueObject>	AnnotationSetDaoImpl.findSummariesByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)
List<AnnotationSetSummaryValueObject>	AnnotationSetService.findSummariesByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)	Thin metadata projection.
List<AnnotationSetSummaryValueObject>	AnnotationSetServiceImpl.findSummariesByInvestigation(Investigation investigation, AnnotationSetRole roleFilter)
List<AnnotationSetSummaryValueObject>	AnnotationSetDao.listSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds, int offset, int limit, AnnotationSetDao.SummarySort sort, boolean descending)	Cross-experiment thin metadata projection: every AnnotationSet matching the supplied filter, sliced by offset / limit.
List<AnnotationSetSummaryValueObject>	AnnotationSetDaoImpl.listSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds, int offset, int limit, AnnotationSetDao.SummarySort sort, boolean descending)
List<AnnotationSetSummaryValueObject>	AnnotationSetService.listSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds, int offset, int limit, AnnotationSetDao.SummarySort sort, boolean descending)
List<AnnotationSetSummaryValueObject>	AnnotationSetServiceImpl.listSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds, int offset, int limit, AnnotationSetDao.SummarySort sort, boolean descending)