Uses of Enum Class
ubic.gemma.model.common.auditAndSecurity.curation.AnnotationSetSource

Packages that use AnnotationSetSource

Package	Description
ubic.gemma.model.common.auditAndSecurity.curation
ubic.gemma.persistence.service.common.auditAndSecurity.curation

Uses of AnnotationSetSource in ubic.gemma.model.common.auditAndSecurity.curation

Subclasses with type arguments of type AnnotationSetSource in ubic.gemma.model.common.auditAndSecurity.curation

Modifier and Type	Class	Description
enum	AnnotationSetSource	Source discriminator on AnnotationSet rows.

Methods in ubic.gemma.model.common.auditAndSecurity.curation that return AnnotationSetSource

Modifier and Type	Method	Description
static AnnotationSetSource	AnnotationSetSource.fromDbValue(String v)	Parse the lowercase external form back into the enum.
AnnotationSetSource	AnnotationSet.getSource()
AnnotationSetSource	AnnotationSetSummaryValueObject.getSource()
static AnnotationSetSource	AnnotationSetSource.valueOf(String name)	Returns the enum constant of this class with the specified name.
static AnnotationSetSource[]	AnnotationSetSource.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods in ubic.gemma.model.common.auditAndSecurity.curation with parameters of type AnnotationSetSource

Modifier and Type	Method	Description
void	AnnotationSet.setSource(AnnotationSetSource source)
void	AnnotationSetSummaryValueObject.setSource(AnnotationSetSource source)

Constructors in ubic.gemma.model.common.auditAndSecurity.curation with parameters of type AnnotationSetSource

Modifier	Constructor	Description
	AnnotationSetSummaryValueObject(Long id, AnnotationSetRole role, AnnotationSetSource source, AgentCurationKind kind, String runId, String createdBy, Date createdAt, Date updatedAt, Date finalizedAt, String finalizedBy, String agentVersion, String model, String runSha, String agentName, Date ranAt, Long investigationId, Long parentId, Long payloadSize, String status, Integer factorCount, Integer tagCount, String datasetShortName)	Projection constructor used by the HQL SELECT NEW ... query in AnnotationSetDaoImpl.

Uses of AnnotationSetSource in ubic.gemma.persistence.service.common.auditAndSecurity.curation

Methods in ubic.gemma.persistence.service.common.auditAndSecurity.curation with parameters of type AnnotationSetSource

Modifier and Type	Method	Description
AnnotationSetService.AttachedAnnotationSet	AnnotationSetService.attach(Investigation investigation, AnnotationSetRole role, AnnotationSetSource source, AgentCurationKind kind, String runId, String createdBy, String agentVersion, String model, Date ranAt, String payloadJson, AnnotationSet parent)	Attach (or return existing) an annotation set to the given investigation.
AnnotationSetService.AttachedAnnotationSet	AnnotationSetService.attach(Investigation investigation, AnnotationSetRole role, AnnotationSetSource source, AgentCurationKind kind, String runId, String createdBy, AnnotationSetService.RunProvenance runProvenance, String payloadJson, AnnotationSet parent)	As AnnotationSetService.attach(Investigation, AnnotationSetRole, AnnotationSetSource, AgentCurationKind, String, String, String, String, Date, String, AnnotationSet), but carrying the full run provenance rather than the agentVersion / model / ranAt triple.
AnnotationSetService.AttachedAnnotationSet	AnnotationSetServiceImpl.attach(Investigation investigation, AnnotationSetRole role, AnnotationSetSource source, AgentCurationKind kind, String runId, String createdBy, String agentVersion, String model, Date ranAt, String payloadJson, AnnotationSet parent)
AnnotationSetService.AttachedAnnotationSet	AnnotationSetServiceImpl.attach(Investigation investigation, AnnotationSetRole role, AnnotationSetSource source, AgentCurationKind kind, String runId, String createdBy, AnnotationSetService.RunProvenance runProvenance, String payloadJson, AnnotationSet parent)
long	AnnotationSetDao.countSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds)	Cross-experiment count.
long	AnnotationSetDaoImpl.countSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds)
long	AnnotationSetService.countSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds)
long	AnnotationSetServiceImpl.countSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds)
List<AnnotationSetSummaryValueObject>	AnnotationSetDao.listSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds, int offset, int limit, AnnotationSetDao.SummarySort sort, boolean descending)	Cross-experiment thin metadata projection: every AnnotationSet matching the supplied filter, sliced by offset / limit.
List<AnnotationSetSummaryValueObject>	AnnotationSetDaoImpl.listSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds, int offset, int limit, AnnotationSetDao.SummarySort sort, boolean descending)
List<AnnotationSetSummaryValueObject>	AnnotationSetService.listSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds, int offset, int limit, AnnotationSetDao.SummarySort sort, boolean descending)
List<AnnotationSetSummaryValueObject>	AnnotationSetServiceImpl.listSummaries(AnnotationSetRole roleFilter, AnnotationSetSource sourceFilter, String createdByFilter, AgentCurationKind kindFilter, String statusFilter, List<Long> investigationIds, int offset, int limit, AnnotationSetDao.SummarySort sort, boolean descending)