Uses of Class
ubic.gemma.model.common.auditAndSecurity.curation.AnnotationSetTriage

Packages that use AnnotationSetTriage

Package	Description
ubic.gemma.model.common.auditAndSecurity.curation
ubic.gemma.persistence.service.common.auditAndSecurity.curation

Uses of AnnotationSetTriage in ubic.gemma.model.common.auditAndSecurity.curation

Methods in ubic.gemma.model.common.auditAndSecurity.curation that return types with arguments of type AnnotationSetTriage

Modifier and Type	Method	Description
static Optional<AnnotationSetTriage>	AnnotationSetTriage.effective(Collection<AnnotationSetTriage> judgements)	The most recent ruling among judgements, or empty when nobody has ruled.

Method parameters in ubic.gemma.model.common.auditAndSecurity.curation with type arguments of type AnnotationSetTriage

Modifier and Type	Method	Description
static Optional<AnnotationSetTriage>	AnnotationSetTriage.effective(Collection<AnnotationSetTriage> judgements)	The most recent ruling among judgements, or empty when nobody has ruled.
static boolean	AnnotationSetTriage.reviewedByHuman(Collection<AnnotationSetTriage> judgements)

Uses of AnnotationSetTriage in ubic.gemma.persistence.service.common.auditAndSecurity.curation

Subclasses with type arguments of type AnnotationSetTriage in ubic.gemma.persistence.service.common.auditAndSecurity.curation

Modifier and Type	Class	Description
class	AnnotationSetTriageDaoImpl	Hibernate implementation of AnnotationSetTriageDao.

Subinterfaces with type arguments of type AnnotationSetTriage in ubic.gemma.persistence.service.common.auditAndSecurity.curation

Modifier and Type	Interface	Description
interface	AnnotationSetTriageDao	DAO for AnnotationSetTriage rows — one standing ruling per (annotation set, judge).

Methods in ubic.gemma.persistence.service.common.auditAndSecurity.curation that return AnnotationSetTriage

Modifier and Type	Method	Description
AnnotationSetTriage	AnnotationSetTriageDao.findBySetAndJudge(AnnotationSet annotationSet, String judgedBy)	The judgement judgedBy has standing on this set, or null.
AnnotationSetTriage	AnnotationSetTriageDaoImpl.findBySetAndJudge(AnnotationSet annotationSet, String judgedBy)
AnnotationSetTriage	AnnotationSetTriageService.judge(AnnotationSet annotationSet, TriageVerdict verdict, String judgedBy, TriageJudgeKind judgeKind, String note)	Record or replace judgedBy's ruling on annotationSet.
AnnotationSetTriage	AnnotationSetTriageServiceImpl.judge(AnnotationSet annotationSet, TriageVerdict verdict, String judgedBy, TriageJudgeKind judgeKind, String note)

Methods in ubic.gemma.persistence.service.common.auditAndSecurity.curation that return types with arguments of type AnnotationSetTriage

Modifier and Type	Method	Description
Optional<AnnotationSetTriage>	AnnotationSetTriageService.effectiveFor(AnnotationSet annotationSet)	The ruling that counts — the most recent — or empty when nobody has ruled.
Optional<AnnotationSetTriage>	AnnotationSetTriageServiceImpl.effectiveFor(AnnotationSet annotationSet)
Map<Long, AnnotationSetTriage>	AnnotationSetTriageService.effectiveForIds(Collection<Long> annotationSetIds)	Batched AnnotationSetTriageService.effectiveFor(AnnotationSet).
Map<Long, AnnotationSetTriage>	AnnotationSetTriageServiceImpl.effectiveForIds(Collection<Long> annotationSetIds)
Map<Long, AnnotationSetTriage>	AnnotationSetTriageService.effectiveForInvestigationIds(Collection<Long> investigationIds)	The effective ruling for each of several datasets, keyed by dataset id — newest ruling across every annotation set the dataset owns.
Map<Long, AnnotationSetTriage>	AnnotationSetTriageServiceImpl.effectiveForInvestigationIds(Collection<Long> investigationIds)
List<AnnotationSetTriage>	AnnotationSetTriageDao.findByInvestigation(Investigation investigation)	Every judgement on any set attached to one investigation, most recent first — the per-dataset triage view, without loading the sets.
List<AnnotationSetTriage>	AnnotationSetTriageDaoImpl.findByInvestigation(Investigation investigation)
List<AnnotationSetTriage>	AnnotationSetTriageService.findByInvestigation(Investigation investigation)	Every ruling on any set of one investigation, most recent first.
List<AnnotationSetTriage>	AnnotationSetTriageServiceImpl.findByInvestigation(Investigation investigation)
List<AnnotationSetTriage>	AnnotationSetTriageDao.findBySet(AnnotationSet annotationSet)	Every judgement on one set, most recent first.
List<AnnotationSetTriage>	AnnotationSetTriageDaoImpl.findBySet(AnnotationSet annotationSet)
List<AnnotationSetTriage>	AnnotationSetTriageService.findBySet(AnnotationSet annotationSet)	Every ruling on one set, most recent first.
List<AnnotationSetTriage>	AnnotationSetTriageServiceImpl.findBySet(AnnotationSet annotationSet)
Map<Long, AnnotationSetTriage>	AnnotationSetTriageDao.findEffectiveByInvestigationIds(Collection<Long> investigationIds)	The effective ruling for each of several INVESTIGATIONS, keyed by investigation id.
Map<Long, AnnotationSetTriage>	AnnotationSetTriageDaoImpl.findEffectiveByInvestigationIds(Collection<Long> investigationIds)
Map<Long, AnnotationSetTriage>	AnnotationSetTriageDao.findEffectiveBySetIds(Collection<Long> annotationSetIds)	The effective (most recent) judgement for each of annotationSetIds.
Map<Long, AnnotationSetTriage>	AnnotationSetTriageDaoImpl.findEffectiveBySetIds(Collection<Long> annotationSetIds)