| AlignmentBasedGeneMappingEvent |
Signifies a mapping based on sequence alignment performed by the system.
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| AnalysisSuitabilityEvent |
Used for indication of the suitability, or unsuitability, of an entity for a particular type of analysis.
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| AnnotationBasedGeneMappingEvent |
To signify the array design was mapped from an external source, not by our own sequence analysis.
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| AnnotationEvent |
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| ArrayDesignAnalysisEvent |
An event involving the analysis of an ArrayDesign
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| ArrayDesignGeneMappingEvent |
The mapping of probes to genes for an ArrayDesign
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| ArrayDesignMergeEvent |
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| ArrayDesignProbeRenamingEvent |
Signifies that the probes were renamed from their original values.
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| ArrayDesignRepeatAnalysisEvent |
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| ArrayDesignSequenceAnalysisEvent |
The sequence alignment analysis of an ArrayDesign
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| ArrayDesignSequenceRemoveEvent |
Used to indicate that all associations that this array design has with BioSequences have been removed.
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| ArrayDesignSequenceUpdateEvent |
The updating of the sequences associated with an ArrayDesign
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| ArrayDesignSubsumeCheckEvent |
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| AuditEventType |
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| AutomatedAnnotationEvent |
Deprecated.
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| BatchCorrectionEvent |
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| BatchInformationEvent |
Abstract class for events related to batch information.
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| BatchInformationFetchingEvent |
Indicates that batch information was successfully obtained.
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| BatchInformationMissingEvent |
Indicate that batch information has been looked for and was missing.
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| BatchProblemsUpdateEvent |
Event that tracks when batch effects or problems are detected.
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| BioMaterialMappingUpdate |
To indicate that the biomaterial to bioassay mapping of the expression experiment was modified.
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| CommentedEvent |
An event indicating a comment was added to the auditable.
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| CurationDetailsEvent |
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| CurationNoteUpdateEvent |
Indicates that previous validation is being invalidated
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| DataAddedEvent |
Indicates that a data type (for a specific QuantitationType, possibly new) was added.
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| DataRemovedEvent |
Indicates that a data type (for a specific QuantitationType, possibly new) was removed.
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| DataReplacedEvent |
Signifies that the data for the experiment was replaced (or filled in) after the experiment was loaded into the
system.
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| DifferentialExpressionAnalysisEvent |
Indicates the experiment was the subject of a differential expression analysis.
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| DifferentialExpressionSuitabilityEvent |
Used to indicate the suitability status of an ExpressionExperiment for differential expression analysis.
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| DoesNotNeedAttentionEvent |
An event that occurs when a curator has validated the entity and indicated that it is "approved".
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| ExperimentalDesignUpdatedEvent |
Describes an event that involved a change of assignment of factor value to bio material, or other changes in the
experimental design.
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| ExpressionExperimentAnalysisEvent |
An event involving an ExpressionExperiment
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| ExpressionExperimentPlatformSwitchEvent |
The event that this expressionexperiment has had its array design switched (typically to a 'merged' one.
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| ExpressionExperimentUpdateFromGEOEvent |
Indicates that we have updated an expression experiment's information from GEO, after it was already loaded in Gemma.
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| ExpressionExperimentVectorMergeEvent |
Indicates that the "Vector merging" has been done on the associated experiment.
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| FactorValueNeedsAttentionEvent |
Indicates that a factor value needs attention.
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| FailedBatchInformationFetchingEvent |
Indicates that the attempt to get batch information failed due to an error.
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| FailedBatchInformationMissingEvent |
Deprecated.
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| FailedDataReplacedEvent |
Represents a failed data replace.
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| FailedDifferentialExpressionAnalysisEvent |
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| FailedLinkAnalysisEvent |
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| FailedMeanVarianceUpdateEvent |
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| FailedMissingValueAnalysisEvent |
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| FailedPCAAnalysisEvent |
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| FailedProcessedVectorComputationEvent |
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| FailedSampleCorrelationAnalysisEvent |
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| GeeqEvent |
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| LinkAnalysisEvent |
Computing coexpression links for an expression experiment
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| MakePrivateEvent |
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| MakePublicEvent |
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| ManualAnnotationEvent |
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| MeanVarianceUpdateEvent |
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| MissingValueAnalysisEvent |
Computing missing values for an expression experiment
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| NeedsAttentionEvent |
Indicates that previous validation is being invalidated
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| NotTroubledStatusFlagEvent |
This event type resets the trouble flag of curation details of a curatable object.
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| OutlierAnalysisEvent |
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| OutlierFoundAnalysisEvent |
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| OutliersNotFoundAnalysisEvent |
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| PCAAnalysisEvent |
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| PermissionChangeEvent |
Represents a change in permissions
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| ProcessedVectorComputationEvent |
Computation of the "processed" expression data with the ranking (by 'expression level') information filled in, for an
Expression Experiment
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| RankComputationEvent |
For backwards compatibility only.
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| ReleaseDetailsUpdateEvent |
Event triggered when the release details of a Versioned entity are
updated. |
| ResetSuitabilityForDifferentialExpressionAnalysisEvent |
Used to indicate that the suitability status of an experiment is the default.
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| SampleCorrelationAnalysisEvent |
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| SampleRemovalEvent |
Event used when a sample is removed from an experiment (typically due to QC concerns or when marked as an outlier).
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| SampleRemovalReversionEvent |
Indicates that samples that were previously removed have been "put back", e.g.
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| SingleBatchDeterminationEvent |
Indicates that we got batch information, but there was (as far as we can tell) just one batch.
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| SingletonBatchInvalidEvent |
Indiates that there was at least one batch with only one sample.
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| TooSmallDatasetLinkAnalysisEvent |
Indicates that the data set had too few samples or probes to be analyzed (after filtering), and was skipped
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| TroubledStatusFlagEvent |
Sets the trouble flag of curation details of any Curatable object.
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| UninformativeFASTQHeadersForBatchingEvent |
Indicates that FASTQ headers were present, but they were not usable for determining batches, typically because of
invalid formatting or lack of information.
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| UnsuitableForDifferentialExpressionAnalysisEvent |
Indicates that the associated Experiment is NOT suitable for differential expression analysis.
|
| VersionedEvent |
Base class for events relating to a Versioned entity. |