Class DataVector

java.lang.Object
ubic.gemma.model.common.AbstractIdentifiable
ubic.gemma.model.expression.bioAssayData.DataVector
All Implemented Interfaces:
Identifiable
Direct Known Subclasses:
DesignElementDataVector
@MappedSuperclass public abstract class DataVector extends AbstractIdentifiable
An abstract class representing a one-dimensional vector of data about some aspect of an ExpressionExperiment.
See Also:

  • Constructor Details

    • DataVector

      public DataVector()

  • Method Details

    • getQuantitationType

      public abstract QuantitationType getQuantitationType()
      Owning QuantitationType. Fetch mode varies by concrete subclass — bulk vectors keep the QT LAZY to avoid an N+1 on bulk loads, single-cell vectors fetch eagerly to match the original hbm. Declared as an abstract accessor here so each subclass can configure its own @ManyToOne fetch policy (which @MappedSuperclass + @AssociationOverride cannot do).

    • setQuantitationType

      public abstract void setQuantitationType(QuantitationType quantitationType)

    • getDataAsBuffer

      public Buffer getDataAsBuffer()
      Obtain the data as a generic Buffer.

    • getDataAsFloats

      public float[] getDataAsFloats()

    • setDataAsFloats

      public void setDataAsFloats(float[] data)

    • getDataAsFloatBuffer

      public FloatBuffer getDataAsFloatBuffer()

    • getDataAsDoubles

      public double[] getDataAsDoubles()

    • getDataAsDoubleBuffer

      public DoubleBuffer getDataAsDoubleBuffer()
      Obtain the data as a DoubleBuffer.

      The underlying data is not copied, so this is the most efficient way to perform arbitrary access or slice parts of the vector.

    • setDataAsDoubles

      public void setDataAsDoubles(double[] data)

    • getDataAsBooleans

      public boolean[] getDataAsBooleans()

    • setDataAsBooleans

      public void setDataAsBooleans(boolean[] data)

    • getDataAsChars

      public char[] getDataAsChars()

    • setDataAsChars

      public void setDataAsChars(char[] data)

    • getDataAsInts

      public int[] getDataAsInts()

    • getDataAsIntBuffer

      public IntBuffer getDataAsIntBuffer()

    • setDataAsInts

      public void setDataAsInts(int[] data)

    • getDataAsLongs

      public long[] getDataAsLongs()

    • getDataAsLongBuffer

      public LongBuffer getDataAsLongBuffer()

    • setDataAsLongs

      public void setDataAsLongs(long[] data)

    • getDataAsStrings

      public String[] getDataAsStrings()

    • setDataAsStrings

      public void setDataAsStrings(String[] data)

    • getDataAsTabbedStrings

      public String[] getDataAsTabbedStrings()

    • setDataAsTabbedStrings

      public void setDataAsTabbedStrings(String[] data)

    • getDataAsObjects

      public Object[] getDataAsObjects()

    • setDataAsObjects

      public void setDataAsObjects(Object[] data)

    • hashCode

      public int hashCode()
      Returns a hash code based on this entity's identifiers.
      Specified by:
      hashCode in class AbstractIdentifiable

    • getExpressionExperiment

      public ExpressionExperiment getExpressionExperiment()

    • getData

      public byte[] getData()

    • setExpressionExperiment

      public void setExpressionExperiment(ExpressionExperiment expressionExperiment)

    • setData

      public void setData(byte[] data)