Package ubic.gemma.model.expression.bioAssayData

Class SingleCellDimension

java.lang.Object

ubic.gemma.model.common.AbstractIdentifiable

ubic.gemma.model.expression.bioAssayData.SingleCellDimension

All Implemented Interfaces:

Identifiable

public class SingleCellDimension
extends AbstractIdentifiable
implements Identifiable

Represents a single-cell dimension, holding shared information for a set of SingleCellExpressionDataVector.

Author:

poirigui

See Also:

• SingleCellExpressionDataVector

Constructor Summary

Constructors

Constructor	Description
SingleCellDimension()

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object obj)	Important note: Two objects with the same class and non-null ID must be considered equal.
BioAssay	getBioAssay(int cellIndex)	Obtain the BioAssay for a given cell position.
List<String>	getCellIdsBySample(int sampleIndex)	Obtain a list of cell IDs for the given sample.
int	getNumberOfCellsBySample(int sampleIndex)	Obtain the number for cells for the given sample.
int	hashCode()	Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.
String	toString()

Methods inherited from class ubic.gemma.model.common.AbstractIdentifiable

getId, setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.common.Identifiable

getId

Constructor Details

SingleCellDimension

public SingleCellDimension()

Method Details

getBioAssay

public BioAssay getBioAssay(int cellIndex)
                     throws IndexOutOfBoundsException

Obtain the BioAssay for a given cell position.

Parameters:

cellIndex - the cell position in cellIds

Throws:

IllegalArgumentException - if the sparse range array is invalid as per SparseListUtils.getSparseRangeArrayElement(List, int[], int, int)

IndexOutOfBoundsException - if the index is out of bounds

getCellIdsBySample

public List<String> getCellIdsBySample(int sampleIndex)

Obtain a list of cell IDs for the given sample.

Parameters:

sampleIndex - the sample position in bioAssays

getNumberOfCellsBySample

public int getNumberOfCellsBySample(int sampleIndex)

Obtain the number for cells for the given sample.

This is more efficient than looking up the size of getCellIdsBySample(int).

Parameters:

sampleIndex - the sample position in bioAssays

hashCode

public int hashCode()

Description copied from class: AbstractIdentifiable

Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.

Specified by:

hashCode in class AbstractIdentifiable

equals

public boolean equals(Object obj)

Description copied from class: AbstractIdentifiable

Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.

Specified by:

equals in class AbstractIdentifiable

toString

public String toString()

Overrides:

toString in class AbstractIdentifiable