Package ubic.gemma.model.expression.designElement

Class CompositeSequence

java.lang.Object

ubic.gemma.model.common.AbstractDescribable

ubic.gemma.model.expression.designElement.CompositeSequence

All Implemented Interfaces:

Serializable, Describable, Identifiable

@Indexed
public class CompositeSequence
extends AbstractDescribable
implements Serializable

A "Probe set" (Affymetrix) or a "Probe" (other types of arrays). The sequence referred to is a "target sequence" (Affymetrix), oligo (oligo arrays) or cDNA clone/EST (cDNA arrays)

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	CompositeSequence.Factory

Constructor Summary

Constructors

Constructor	Description
CompositeSequence()	No-arg constructor added to satisfy javabean contract

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object obj)	Returns true if the argument is an Describable instance and all identifiers for this entity equal the identifiers of the argument entity.
ArrayDesign	getArrayDesign()
BioSequence	getBiologicalCharacteristic()
String	getDescription()	Obtain a human-readable description of the object
Long	getId()
String	getName()	Obtain the name of an object is a possibly ambiguous human-readable identifier that need not be an external database reference.
int	hashCode()	Returns a hash code based on this entity's identifiers.
void	setArrayDesign(ArrayDesign arrayDesign)
void	setBiologicalCharacteristic(BioSequence biologicalCharacteristic)

Methods inherited from class ubic.gemma.model.common.AbstractDescribable

setDescription, setId, setName, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

CompositeSequence

public CompositeSequence()

No-arg constructor added to satisfy javabean contract

Method Detail

equals

public boolean equals(Object obj)

Description copied from class: AbstractDescribable

Returns true if the argument is an Describable instance and all identifiers for this entity equal the identifiers of the argument entity. Returns false otherwise.

Overrides:

equals in class AbstractDescribable

hashCode

public int hashCode()

Description copied from class: AbstractDescribable

Returns a hash code based on this entity's identifiers.

Overrides:

hashCode in class AbstractDescribable

getId

@DocumentId
public Long getId()

Specified by:

getId in interface Identifiable

Overrides:

getId in class AbstractDescribable

getName

@Field
public String getName()

Description copied from interface: Describable

Obtain the name of an object is a possibly ambiguous human-readable identifier that need not be an external database reference.

Specified by:

getName in interface Describable

Overrides:

getName in class AbstractDescribable

getDescription

@Field(store=YES)
public String getDescription()

Description copied from interface: Describable

Obtain a human-readable description of the object

Specified by:

getDescription in interface Describable

Overrides:

getDescription in class AbstractDescribable

getArrayDesign

public ArrayDesign getArrayDesign()

setArrayDesign

public void setArrayDesign(ArrayDesign arrayDesign)

getBiologicalCharacteristic

@IndexedEmbedded
public BioSequence getBiologicalCharacteristic()

Returns:

The sequence for this composite sequence.

setBiologicalCharacteristic

public void setBiologicalCharacteristic(BioSequence biologicalCharacteristic)