Package ubic.gemma.model.expression.designElement

Class CompositeSequence

java.lang.Object

ubic.gemma.model.common.AbstractIdentifiable

ubic.gemma.model.common.AbstractDescribable

ubic.gemma.model.expression.designElement.CompositeSequence

All Implemented Interfaces:

Describable, Identifiable

@Indexed
public class CompositeSequence
extends AbstractDescribable

A "Probe set" (Affymetrix) or a "Probe" (other types of arrays). The sequence referred to is a "target sequence" (Affymetrix), oligo (oligo arrays) or cDNA clone/EST (cDNA arrays)

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static final class	CompositeSequence.Factory

Constructor Summary

Constructors

Constructor	Description
CompositeSequence()

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object obj)	Important note: Two objects with the same class and non-null ID must be considered equal.
ArrayDesign	getArrayDesign()
BioSequence	getBiologicalCharacteristic()
String	getDescription()	Obtain a human-readable description of the object
Long	getId()
String	getName()	Obtain the name of an object is a possibly ambiguous human-readable identifier that need not be an external database reference.
void	setArrayDesign(ArrayDesign arrayDesign)
void	setBiologicalCharacteristic(BioSequence biologicalCharacteristic)

Methods inherited from class ubic.gemma.model.common.AbstractDescribable

hashCode, setDescription, setName, toString

Methods inherited from class ubic.gemma.model.common.AbstractIdentifiable

setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

CompositeSequence

public CompositeSequence()

Method Details

getId

@DocumentId
public Long getId()

Specified by:

getId in interface Identifiable

Overrides:

getId in class AbstractIdentifiable

getName

@Field
public String getName()

Description copied from interface: Describable

Obtain the name of an object is a possibly ambiguous human-readable identifier that need not be an external database reference.

Specified by:

getName in interface Describable

Overrides:

getName in class AbstractDescribable

getDescription

@Field(store=YES)
public String getDescription()

Description copied from interface: Describable

Obtain a human-readable description of the object

Specified by:

getDescription in interface Describable

Overrides:

getDescription in class AbstractDescribable

getArrayDesign

public ArrayDesign getArrayDesign()

setArrayDesign

public void setArrayDesign(ArrayDesign arrayDesign)

getBiologicalCharacteristic

@IndexedEmbedded
public BioSequence getBiologicalCharacteristic()

Returns:

The sequence for this composite sequence.

setBiologicalCharacteristic

public void setBiologicalCharacteristic(BioSequence biologicalCharacteristic)

equals

public boolean equals(Object obj)

Description copied from class: AbstractIdentifiable

Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.

Specified by:

equals in class AbstractIdentifiable