Package ubic.gemma.model.genome.gene

Class FreeTextGeneResultsValueObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<GeneSet>

ubic.gemma.model.genome.gene.GeneSetValueObject

ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject

ubic.gemma.model.genome.gene.FreeTextGeneResultsValueObject

All Implemented Interfaces:

gemma.gsec.model.Securable, gemma.gsec.model.SecureValueObject, Serializable, GemmaSessionBackedValueObject, Identifiable

public class FreeTextGeneResultsValueObject
extends SessionBoundGeneSetValueObject

*

Author:

tvrossum

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.gemma.model.common.IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
FreeTextGeneResultsValueObject()	default constructor to satisfy java bean contract
FreeTextGeneResultsValueObject(String name, String description, Long taxonId, String taxonName, Collection<Long> geneIds, String queryString)	Method to create a display object from scratch

Method Summary

Modifier and Type	Method	Description
String	getQueryString()
void	setQueryString(String queryString)

Methods inherited from class ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject

isModified, setModified

Methods inherited from class ubic.gemma.model.genome.gene.GeneSetValueObject

getCurrentUserIsOwner, getIsPublic, getIsShared, getSecurableClass, getSize, getTaxonId, getTaxonName, getUserCanWrite, getUserOwned, setIsPublic, setIsShared, setSize, setUserCanWrite, toString

Methods inherited from class ubic.gemma.model.common.IdentifiableValueObject

getId, setId

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.common.GemmaSessionBackedValueObject

getId, setId

Methods inherited from interface gemma.gsec.model.Securable

getId

Methods inherited from interface gemma.gsec.model.SecureValueObject

setUserOwned

Constructor Detail

FreeTextGeneResultsValueObject

public FreeTextGeneResultsValueObject()

default constructor to satisfy java bean contract

FreeTextGeneResultsValueObject

public FreeTextGeneResultsValueObject(String name,
                                      String description,
                                      Long taxonId,
                                      String taxonName,
                                      Collection<Long> geneIds,
                                      String queryString)

Method to create a display object from scratch

Parameters:

name - cannot be null

description - should not be null

taxonId - can be null

taxonName - can be null

geneIds - can be null; for a gene or experiment, this is a collection just containing their id

queryString - the query string

Method Detail

getQueryString

public String getQueryString()

Returns:

the queryString

setQueryString

public void setQueryString(String queryString)

Parameters:

queryString - the queryString to set