Package ubic.gemma.model.genome.gene

Class GeneProduct

java.lang.Object
ubic.gemma.model.common.AbstractIdentifiable
ubic.gemma.model.common.AbstractDescribable
ubic.gemma.model.genome.ChromosomeFeature
ubic.gemma.model.genome.gene.GeneProduct
All Implemented Interfaces:
Describable, Identifiable
@Indexed public class GeneProduct extends ChromosomeFeature

  • Constructor Details

    • GeneProduct

      public GeneProduct()

  • Method Details

    • hashCode

      public int hashCode()
      Description copied from class: AbstractIdentifiable
      Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.
      Overrides:
      hashCode in class AbstractDescribable

    • equals

      public boolean equals(Object object)
      Description copied from class: AbstractIdentifiable
      Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.
      Specified by:
      equals in class AbstractIdentifiable

    • toString

      public String toString()
      Overrides:
      toString in class AbstractDescribable

    • getId

      @DocumentId public Long getId()
      Specified by:
      getId in interface Identifiable
      Overrides:
      getId in class AbstractIdentifiable

    • getName

      @Field public String getName()
      Description copied from interface: Describable
      Obtain the name of an object is a possibly ambiguous human-readable identifier that need not be an external database reference.
      Specified by:
      getName in interface Describable
      Overrides:
      getName in class AbstractDescribable

    • getAccessions

      @IndexedEmbedded public Set<DatabaseEntry> getAccessions()

    • setAccessions

      public void setAccessions(Set<DatabaseEntry> accessions)

    • getExons

      public Set<PhysicalLocation> getExons()
      Only used for transient instances in sequence analysis, we do not store exon locations in the database.
      Returns:
      physical locations of exons

    • setExons

      public void setExons(Set<PhysicalLocation> exons)
      Only used for transient instances, we do not store exon locations in the database.
      Parameters:
      exons - new physical locations of exons

    • getGene

      public Gene getGene()

    • setGene

      public void setGene(Gene gene)

    • getNcbiGi

      @Field(analyze=NO) public String getNcbiGi()
      Returns:
      GI for the gene product (if available)

    • setNcbiGi

      public void setNcbiGi(String ncbiGi)

    • getPreviousNcbiId

      @Field public String getPreviousNcbiId()
      Overrides:
      getPreviousNcbiId in class ChromosomeFeature
      Returns:
      The last-used NCBI id for this feature, according to the history information provided by NCBI. This may be empty.

    • isDummy

      public boolean isDummy()

    • setDummy

      public void setDummy(boolean dummy)