Uses of Class
ubic.gemma.model.genome.gene.DatabaseBackedGeneSetValueObject
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Uses of DatabaseBackedGeneSetValueObject in ubic.gemma.core.genome.gene
Methods in ubic.gemma.core.genome.gene that return DatabaseBackedGeneSetValueObject Modifier and Type Method Description DatabaseBackedGeneSetValueObject
GeneSetValueObjectHelper. convertToLightValueObject(GeneSet gs)
Constructor to build value object from GeneSet.DatabaseBackedGeneSetValueObject
GeneSetValueObjectHelperImpl. convertToLightValueObject(GeneSet gs)
DatabaseBackedGeneSetValueObject
GeneSetValueObjectHelper. convertToValueObject(GeneSet gs)
Constructor to build value object from GeneSet.DatabaseBackedGeneSetValueObject
GeneSetValueObjectHelperImpl. convertToValueObject(GeneSet gs)
Methods in ubic.gemma.core.genome.gene that return types with arguments of type DatabaseBackedGeneSetValueObject Modifier and Type Method Description List<DatabaseBackedGeneSetValueObject>
GeneSetValueObjectHelper. convertToLightValueObjects(Collection<GeneSet> genesets, boolean includeOnesWithoutGenes)
results will be sorted by sizeList<DatabaseBackedGeneSetValueObject>
GeneSetValueObjectHelperImpl. convertToLightValueObjects(Collection<GeneSet> geneSets, boolean includeOnesWithoutGenes)
List<DatabaseBackedGeneSetValueObject>
GeneSetValueObjectHelper. convertToValueObjects(Collection<GeneSet> sets)
List<DatabaseBackedGeneSetValueObject>
GeneSetValueObjectHelper. convertToValueObjects(Collection<GeneSet> geneSets, boolean includeOnesWithoutGenes)
List<DatabaseBackedGeneSetValueObject>
GeneSetValueObjectHelperImpl. convertToValueObjects(Collection<GeneSet> sets)
List<DatabaseBackedGeneSetValueObject>
GeneSetValueObjectHelperImpl. convertToValueObjects(Collection<GeneSet> genesets, boolean includeOnesWithoutGenes)
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Uses of DatabaseBackedGeneSetValueObject in ubic.gemma.core.genome.gene.service
Methods in ubic.gemma.core.genome.gene.service that return DatabaseBackedGeneSetValueObject Modifier and Type Method Description DatabaseBackedGeneSetValueObject
GeneSetService. loadValueObject(GeneSet geneSet)
DatabaseBackedGeneSetValueObject
GeneSetServiceImpl. loadValueObject(GeneSet geneSet)
DatabaseBackedGeneSetValueObject
GeneSetService. loadValueObjectById(Long entityId)
DatabaseBackedGeneSetValueObject
GeneSetService. loadValueObjectByIdLite(Long id)
DatabaseBackedGeneSetValueObject
GeneSetServiceImpl. loadValueObjectByIdLite(Long id)
DatabaseBackedGeneSetValueObject
GeneSetService. updateDatabaseEntityNameDesc(DatabaseBackedGeneSetValueObject geneSetVO)
AJAX Updates the database entity (permission permitting) with the name and description fields of the param value objectDatabaseBackedGeneSetValueObject
GeneSetServiceImpl. updateDatabaseEntityNameDesc(DatabaseBackedGeneSetValueObject geneSetVO)
Methods in ubic.gemma.core.genome.gene.service with parameters of type DatabaseBackedGeneSetValueObject Modifier and Type Method Description void
GeneSetService. deleteDatabaseEntity(DatabaseBackedGeneSetValueObject geneSetVO)
Security is handled within method, when the set is loadedvoid
GeneSetServiceImpl. deleteDatabaseEntity(DatabaseBackedGeneSetValueObject geneSetVO)
DatabaseBackedGeneSetValueObject
GeneSetService. updateDatabaseEntityNameDesc(DatabaseBackedGeneSetValueObject geneSetVO)
AJAX Updates the database entity (permission permitting) with the name and description fields of the param value objectDatabaseBackedGeneSetValueObject
GeneSetServiceImpl. updateDatabaseEntityNameDesc(DatabaseBackedGeneSetValueObject geneSetVO)
Method parameters in ubic.gemma.core.genome.gene.service with type arguments of type DatabaseBackedGeneSetValueObject Modifier and Type Method Description void
GeneSetService. deleteDatabaseEntities(Collection<DatabaseBackedGeneSetValueObject> vos)
Security is handled within methodvoid
GeneSetServiceImpl. deleteDatabaseEntities(Collection<DatabaseBackedGeneSetValueObject> vos)
Collection<DatabaseBackedGeneSetValueObject>
GeneSetService. updateDatabaseEntity(Collection<DatabaseBackedGeneSetValueObject> geneSetVos)
AJAX Updates the database entity (permission permitting) with the fields of the param value objectCollection<DatabaseBackedGeneSetValueObject>
GeneSetServiceImpl. updateDatabaseEntity(Collection<DatabaseBackedGeneSetValueObject> geneSetVos)
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Uses of DatabaseBackedGeneSetValueObject in ubic.gemma.persistence.service.genome.gene
Methods in ubic.gemma.persistence.service.genome.gene that return DatabaseBackedGeneSetValueObject Modifier and Type Method Description DatabaseBackedGeneSetValueObject
GeneSetDaoImpl. loadValueObject(GeneSet geneSet)
DatabaseBackedGeneSetValueObject
GeneSetDaoImpl. loadValueObjectById(Long id)
DatabaseBackedGeneSetValueObject
GeneSetDao. loadValueObjectByIdLite(Long id)
DatabaseBackedGeneSetValueObject
GeneSetDaoImpl. loadValueObjectByIdLite(Long id)
Methods in ubic.gemma.persistence.service.genome.gene that return types with arguments of type DatabaseBackedGeneSetValueObject Modifier and Type Method Description List<DatabaseBackedGeneSetValueObject>
GeneSetDaoImpl. loadAllValueObjects()
List<DatabaseBackedGeneSetValueObject>
GeneSetDaoImpl. loadValueObjects(Collection<GeneSet> entities)
List<DatabaseBackedGeneSetValueObject>
GeneSetDaoImpl. loadValueObjectsByIds(Collection<Long> ids)
List<DatabaseBackedGeneSetValueObject>
GeneSetDao. loadValueObjectsByIdsLite(Collection<Long> geneSetIds)
List<DatabaseBackedGeneSetValueObject>
GeneSetDaoImpl. loadValueObjectsByIdsLite(Collection<Long> ids)
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Uses of DatabaseBackedGeneSetValueObject in ubic.gemma.web.controller.genome.gene
Methods in ubic.gemma.web.controller.genome.gene that return DatabaseBackedGeneSetValueObject Modifier and Type Method Description DatabaseBackedGeneSetValueObject
GeneSetController. load(Long id)
AJAX - load with the IDs filled inDatabaseBackedGeneSetValueObject
GeneSetController. updateNameDesc(DatabaseBackedGeneSetValueObject geneSetVO)
AJAX Updates the given gene group (permission permitting) with the given list of geneIds Will not allow the same gene to be added to the gene set twice.Methods in ubic.gemma.web.controller.genome.gene that return types with arguments of type DatabaseBackedGeneSetValueObject Modifier and Type Method Description Collection<DatabaseBackedGeneSetValueObject>
GeneSetController. getUsersGeneGroups(boolean privateOnly, Long taxonId)
AJAX Returns just the current users gene setsCollection<DatabaseBackedGeneSetValueObject>
GeneSetController. remove(Collection<DatabaseBackedGeneSetValueObject> vos)
AJAX Given a valid gene group will remove it from db (if the user has permissons to do so).Collection<DatabaseBackedGeneSetValueObject>
GeneSetController. update(Collection<DatabaseBackedGeneSetValueObject> geneSetVos)
AJAX Updates the given gene group (permission permitting) with the given list of geneIds Will not allow the same gene to be added to the gene set twice.Methods in ubic.gemma.web.controller.genome.gene with parameters of type DatabaseBackedGeneSetValueObject Modifier and Type Method Description DatabaseBackedGeneSetValueObject
GeneSetController. updateNameDesc(DatabaseBackedGeneSetValueObject geneSetVO)
AJAX Updates the given gene group (permission permitting) with the given list of geneIds Will not allow the same gene to be added to the gene set twice.Method parameters in ubic.gemma.web.controller.genome.gene with type arguments of type DatabaseBackedGeneSetValueObject Modifier and Type Method Description Collection<DatabaseBackedGeneSetValueObject>
GeneSetController. remove(Collection<DatabaseBackedGeneSetValueObject> vos)
AJAX Given a valid gene group will remove it from db (if the user has permissons to do so).Collection<DatabaseBackedGeneSetValueObject>
GeneSetController. update(Collection<DatabaseBackedGeneSetValueObject> geneSetVos)
AJAX Updates the given gene group (permission permitting) with the given list of geneIds Will not allow the same gene to be added to the gene set twice.
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