Uses of Class
ubic.gemma.model.genome.gene.GeneReferenceValueObject

Packages that use GeneReferenceValueObject

Package	Description
ubic.gemma.model.analysis.sequence
ubic.gemma.model.expression.designElement
ubic.gemma.persistence.service.expression.designElement

Uses of GeneReferenceValueObject in ubic.gemma.model.analysis.sequence

Methods in ubic.gemma.model.analysis.sequence that return types with arguments of type GeneReferenceValueObject

Modifier and Type	Method	Description
List<GeneReferenceValueObject>	GeneMappingSummaryValueObject.getGenes()	Genes this alignment supports, deduplicated — a gene reached through several of its gene products appears once.

Method parameters in ubic.gemma.model.analysis.sequence with type arguments of type GeneReferenceValueObject

Modifier and Type	Method	Description
void	GeneMappingSummaryValueObject.setGenes(List<GeneReferenceValueObject> genes)	Genes this alignment supports, deduplicated — a gene reached through several of its gene products appears once.

Constructor parameters in ubic.gemma.model.analysis.sequence with type arguments of type GeneReferenceValueObject

Modifier	Constructor	Description
	GeneMappingSummaryValueObject(BlatResultValueObject blatResult, List<GeneReferenceValueObject> genes)

Uses of GeneReferenceValueObject in ubic.gemma.model.expression.designElement

Methods in ubic.gemma.model.expression.designElement that return types with arguments of type GeneReferenceValueObject

Modifier and Type	Method	Description
List<GeneReferenceValueObject>	CompositeSequenceValueObject.getGenes()	Compact identities of the genes this element maps to, via the denormalized GENE2CS table.

Method parameters in ubic.gemma.model.expression.designElement with type arguments of type GeneReferenceValueObject

Modifier and Type	Method	Description
void	CompositeSequenceValueObject.setGenes(List<GeneReferenceValueObject> genes)	Compact identities of the genes this element maps to, via the denormalized GENE2CS table.

Uses of GeneReferenceValueObject in ubic.gemma.persistence.service.expression.designElement

Methods in ubic.gemma.persistence.service.expression.designElement that return types with arguments of type GeneReferenceValueObject

Modifier and Type	Method	Description
Map<Long, List<GeneReferenceValueObject>>	CompositeSequenceDao.getGeneData(Collection<Long> compositeSequenceIds)	Batch-fetch the compact gene identities mapped to each of the supplied composite-sequence ids, keyed by composite-sequence id.
Map<Long, List<GeneReferenceValueObject>>	CompositeSequenceDaoImpl.getGeneData(Collection<Long> compositeSequenceIds)
Map<Long, List<GeneReferenceValueObject>>	CompositeSequenceReadService.getGeneData(Collection<Long> compositeSequenceIds)
Map<Long, List<GeneReferenceValueObject>>	CompositeSequenceReadServiceImpl.getGeneData(Collection<Long> compositeSequenceIds)
Map<Long, List<GeneReferenceValueObject>>	CompositeSequenceService.getGeneData(Collection<Long> compositeSequenceIds)
Map<Long, List<GeneReferenceValueObject>>	CompositeSequenceServiceImpl.getGeneData(Collection<Long> compositeSequenceIds)