Package ubic.gemma.model.genome.gene.phenotype.valueObject

Class GeneEvidenceValueObject

java.lang.Object

ubic.gemma.model.IdentifiableValueObject<Gene>

ubic.gemma.model.genome.gene.GeneValueObject

ubic.gemma.model.genome.gene.phenotype.valueObject.GeneEvidenceValueObject

All Implemented Interfaces:

Serializable, Identifiable

@Deprecated
public class GeneEvidenceValueObject
extends GeneValueObject

Deprecated.

Author:

kelsey

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.gemma.model.IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
GeneEvidenceValueObject()	Deprecated. Required when using the class as a spring bean.
GeneEvidenceValueObject(Long id)	Deprecated.
GeneEvidenceValueObject(Gene gene, Collection<EvidenceValueObject<? extends PhenotypeAssociation>> evidence)	Deprecated.

Method Summary

Modifier and Type	Method	Description
Set<String>	findAllPhenotpyesOnGene()	Deprecated.
Collection<EvidenceValueObject<? extends PhenotypeAssociation>>	getEvidence()	Deprecated.
Set<String>	getPhenotypesValueUri()	Deprecated.
void	setEvidence(Collection<EvidenceValueObject<? extends PhenotypeAssociation>> evidence)	Deprecated.
void	setPhenotypesValueUri(Set<String> phenotypesValueUri)	Deprecated.

Methods inherited from class ubic.gemma.model.genome.gene.GeneValueObject

convert2ValueObject, convertMembers2GeneValueObjects, getTaxonCommonName, getTaxonId, getTaxonScientificName, toString

Methods inherited from class ubic.gemma.model.IdentifiableValueObject

getId, setId

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GeneEvidenceValueObject

public GeneEvidenceValueObject()

Deprecated.

Required when using the class as a spring bean.

GeneEvidenceValueObject

public GeneEvidenceValueObject(Long id)

Deprecated.

GeneEvidenceValueObject

public GeneEvidenceValueObject(Gene gene,
                               Collection<EvidenceValueObject<? extends PhenotypeAssociation>> evidence)

Deprecated.

Method Detail

findAllPhenotpyesOnGene

public Set<String> findAllPhenotpyesOnGene()

Deprecated.

Returns:

Given a geneVO finds all valueRI of phenotypes for that gene

getEvidence

public Collection<EvidenceValueObject<? extends PhenotypeAssociation>> getEvidence()

Deprecated.

setEvidence

public void setEvidence(Collection<EvidenceValueObject<? extends PhenotypeAssociation>> evidence)

Deprecated.

getPhenotypesValueUri

public Set<String> getPhenotypesValueUri()

Deprecated.

setPhenotypesValueUri

public void setPhenotypesValueUri(Set<String> phenotypesValueUri)

Deprecated.