AnnotationAssociation (Gemma 1.31.4 API)

java.lang.Object
- ubic.gemma.model.association.BioSequence2GeneProduct
- - ubic.gemma.model.genome.sequenceAnalysis.AnnotationAssociation

All Implemented Interfaces:

Serializable, Identifiable
```
public class AnnotationAssociation
extends BioSequence2GeneProduct
```
An association between BioSequence and GeneProduct that is provided through an external annotation source, rather than our own sequence analysis. Importantly, the 'overlap', 'score' and other parameters will not be filled in. Also note that in these cases the associated BioSequence may not have actual sequence information filled in. This type of association is used as a "last resort" annotation source for the following types of situations: No sequence information is available; annotations are unavailable (e.g., non-model organisms); or sequences are too short to align using our usual methods (e.g., miRNAs).

See Also:

Serialized Form

- Nested Class Summary
  
  Nested Classes
  Modifier and Type Class Description
  
  static class AnnotationAssociation.Factory
- Constructor Summary
  
  Constructors
  Constructor Description
  
  AnnotationAssociation()
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  ExternalDatabase getSource()
  
  void setSource(ExternalDatabase source)
  - Methods inherited from class ubic.gemma.model.association.BioSequence2GeneProduct
    getBioSequence, getGeneProduct, getId, getOverlap, getScore, getSourceAnalysis, getSpecificity, getThreePrimeDistance, getThreePrimeDistanceMeasurementMethod, setBioSequence, setGeneProduct, setId, setOverlap, setScore, setSourceAnalysis, setSpecificity, setThreePrimeDistance, setThreePrimeDistanceMeasurementMethod
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - AnnotationAssociation
```
public AnnotationAssociation()
```
- Method Detail
  - getSource
```
public ExternalDatabase getSource()
```
    Returns:
    
    The original source of the annotation, such as GEO or flyBase.
  - setSource
```
public void setSource(ExternalDatabase source)
```