Uses of Class
ubic.gemma.model.genome.sequenceAnalysis.BioSequenceValueObject

Packages that use BioSequenceValueObject

Package	Description
ubic.gemma.model.genome.sequenceAnalysis
ubic.gemma.persistence.service.genome.biosequence

Uses of BioSequenceValueObject in ubic.gemma.model.genome.sequenceAnalysis

Methods in ubic.gemma.model.genome.sequenceAnalysis that return BioSequenceValueObject

Modifier and Type	Method	Description
static BioSequenceValueObject	BioSequenceValueObject.fromEntity(BioSequence bs)
BioSequenceValueObject	BlatResultValueObject.getQuerySequence()

Methods in ubic.gemma.model.genome.sequenceAnalysis that return types with arguments of type BioSequenceValueObject

Modifier and Type	Method	Description
static Collection<BioSequenceValueObject>	BioSequenceValueObject.fromEntities(Collection<BioSequence> bsList)

Methods in ubic.gemma.model.genome.sequenceAnalysis with parameters of type BioSequenceValueObject

Modifier and Type	Method	Description
void	BlatResultValueObject.setQuerySequence(BioSequenceValueObject querySequence)

Constructors in ubic.gemma.model.genome.sequenceAnalysis with parameters of type BioSequenceValueObject

Modifier	Constructor	Description
	BlatResultValueObject(Long id, TaxonValueObject taxon, Integer blockCount, String blockSizes, Integer matches, Integer mismatches, Integer ns, Integer queryEnd, Integer queryGapBases, Integer queryGapCount, BioSequenceValueObject querySequence, Integer queryStart, String queryStarts, Integer repMatches, Double score, Double identity, String strand, String targetChromosomeName, String targetDatabase, Long targetEnd, Integer targetGapBases, Integer targetGapCount, Long targetStart, String targetStarts)

Uses of BioSequenceValueObject in ubic.gemma.persistence.service.genome.biosequence

Subclasses with type arguments of type BioSequenceValueObject in ubic.gemma.persistence.service.genome.biosequence

Modifier and Type	Class	Description
class	BioSequenceDaoImpl
class	BioSequenceServiceImpl	Spring Service base class for BioSequenceService, provides access to all services and entities referenced by this service.

Subinterfaces with type arguments of type BioSequenceValueObject in ubic.gemma.persistence.service.genome.biosequence

Modifier and Type	Interface	Description
interface	BioSequenceDao
interface	BioSequenceService

Methods in ubic.gemma.persistence.service.genome.biosequence that return BioSequenceValueObject

Modifier and Type	Method	Description
protected BioSequenceValueObject	BioSequenceDaoImpl.doLoadValueObject(BioSequence entity)