Uses of Class
ubic.gemma.model.genome.sequenceAnalysis.BioSequenceValueObject
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Packages that use BioSequenceValueObject Package Description ubic.gemma.model.genome.sequenceAnalysis ubic.gemma.persistence.service.genome.biosequence -
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Uses of BioSequenceValueObject in ubic.gemma.model.genome.sequenceAnalysis
Methods in ubic.gemma.model.genome.sequenceAnalysis that return BioSequenceValueObject Modifier and Type Method Description static BioSequenceValueObjectBioSequenceValueObject. fromEntity(BioSequence bs)BioSequenceValueObjectBlatResultValueObject. getQuerySequence()Methods in ubic.gemma.model.genome.sequenceAnalysis that return types with arguments of type BioSequenceValueObject Modifier and Type Method Description static Collection<BioSequenceValueObject>BioSequenceValueObject. fromEntities(Collection<BioSequence> bsList)Methods in ubic.gemma.model.genome.sequenceAnalysis with parameters of type BioSequenceValueObject Modifier and Type Method Description voidBlatResultValueObject. setQuerySequence(BioSequenceValueObject querySequence)Constructors in ubic.gemma.model.genome.sequenceAnalysis with parameters of type BioSequenceValueObject Constructor Description BlatResultValueObject(Long id, TaxonValueObject taxon, Integer blockCount, String blockSizes, Integer matches, Integer mismatches, Integer ns, Integer queryEnd, Integer queryGapBases, Integer queryGapCount, BioSequenceValueObject querySequence, Integer queryStart, String queryStarts, Integer repMatches, Double score, Double identity, String strand, String targetChromosomeName, String targetDatabase, Long targetEnd, Integer targetGapBases, Integer targetGapCount, Long targetStart, String targetStarts) -
Uses of BioSequenceValueObject in ubic.gemma.persistence.service.genome.biosequence
Methods in ubic.gemma.persistence.service.genome.biosequence that return BioSequenceValueObject Modifier and Type Method Description protected BioSequenceValueObjectBioSequenceDaoImpl. doLoadValueObject(BioSequence entity)
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