Package ubic.gemma.persistence.persister

Class ExpressionPersister

java.lang.Object

ubic.gemma.persistence.persister.AbstractPersister

ubic.gemma.persistence.persister.CommonPersister

ubic.gemma.persistence.persister.GenomePersister

ubic.gemma.persistence.persister.ArrayDesignPersister

ubic.gemma.persistence.persister.ExpressionPersister

All Implemented Interfaces:

Persister, PersisterHelper

Direct Known Subclasses:

RelationshipPersister

public abstract class ExpressionPersister
extends ArrayDesignPersister
implements PersisterHelper

Author:

pavlidis

Nested Class Summary

Nested classes/interfaces inherited from class ubic.gemma.persistence.persister.AbstractPersister

AbstractPersister.Caches

Field Summary

Fields inherited from class ubic.gemma.persistence.persister.AbstractPersister

log, REPORT_BATCH_SIZE

Constructor Summary

Constructors

Constructor	Description
ExpressionPersister()

Method Summary

Modifier and Type	Method	Description
protected Object	doPersist(Object entity, AbstractPersister.Caches caches)
ExpressionExperiment	persist(ExpressionExperiment ee, ArrayDesignsForExperimentCache cachedArrays)
protected ExpressionExperiment	persistExpressionExperiment(ExpressionExperiment ee, AbstractPersister.Caches caches)
ArrayDesignsForExperimentCache	prepare(ExpressionExperiment ee)

Methods inherited from class ubic.gemma.persistence.persister.GenomePersister

doPersistOrUpdate, persistBioSequence, persistGene, persistTaxon

Methods inherited from class ubic.gemma.persistence.persister.CommonPersister

fillInDatabaseEntry, persistAuditTrail, persistContact, persistExternalDatabase, persistProtocol, persistQuantitationType, persistUnit

Methods inherited from class ubic.gemma.persistence.persister.AbstractPersister

doPersist, getSessionFactory, persist, persist, persistOrUpdate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.persister.Persister

persist, persist, persistOrUpdate

Constructor Details

ExpressionPersister

public ExpressionPersister()

Method Details

persist

@Transactional
public ExpressionExperiment persist(ExpressionExperiment ee,
 @Nullable
 ArrayDesignsForExperimentCache cachedArrays)

Specified by:

persist in interface PersisterHelper

persistExpressionExperiment

protected ExpressionExperiment persistExpressionExperiment(ExpressionExperiment ee,
 AbstractPersister.Caches caches)

prepare

@Secured("GROUP_USER")
public ArrayDesignsForExperimentCache prepare(ExpressionExperiment ee)

Specified by:

prepare in interface PersisterHelper

doPersist

protected Object doPersist(Object entity,
 AbstractPersister.Caches caches)

Overrides:

doPersist in class ArrayDesignPersister