Package ubic.gemma.persistence.service.analysis.expression.pca

Class PrincipalComponentAnalysisDaoImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<PrincipalComponentAnalysis>

ubic.gemma.persistence.service.analysis.expression.pca.PrincipalComponentAnalysisDaoImpl

All Implemented Interfaces:

PrincipalComponentAnalysisDao, BaseDao<PrincipalComponentAnalysis>

@Repository
public class PrincipalComponentAnalysisDaoImpl
extends AbstractDao<PrincipalComponentAnalysis>
implements PrincipalComponentAnalysisDao

Author:

paul

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

log

Constructor Summary

Constructors

Constructor	Description
PrincipalComponentAnalysisDaoImpl(SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method	Description
boolean	existsByExperiment(ExpressionExperiment ee)
Collection<PrincipalComponentAnalysis>	findByExperiment(ExpressionExperiment ee)
List<ProbeLoading>	getTopLoadedProbes(ExpressionExperiment ee, int component, int count)
void	remove(PrincipalComponentAnalysis entity)	Remove a persistent instance
void	removeForExperiment(ExpressionExperiment ee)

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, find, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, getBatchSize, getElementClass, getIdentifierPropertyName, getSessionFactory, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, save, save, streamAll, streamAll, streamQuery, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, getIdentifierPropertyName, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, save, save, streamAll, streamAll, update, update

Constructor Details

PrincipalComponentAnalysisDaoImpl

@Autowired
public PrincipalComponentAnalysisDaoImpl(SessionFactory sessionFactory)

Method Details

findByExperiment

public Collection<PrincipalComponentAnalysis> findByExperiment(ExpressionExperiment ee)

Specified by:

findByExperiment in interface PrincipalComponentAnalysisDao

existsByExperiment

public boolean existsByExperiment(ExpressionExperiment ee)

Specified by:

existsByExperiment in interface PrincipalComponentAnalysisDao

getTopLoadedProbes

public List<ProbeLoading> getTopLoadedProbes(ExpressionExperiment ee,
 int component,
 int count)

Specified by:

getTopLoadedProbes in interface PrincipalComponentAnalysisDao

removeForExperiment

public void removeForExperiment(ExpressionExperiment ee)

Specified by:

removeForExperiment in interface PrincipalComponentAnalysisDao

remove

public void remove(PrincipalComponentAnalysis entity)

Description copied from interface: BaseDao

Remove a persistent instance

Specified by:

remove in interface BaseDao<PrincipalComponentAnalysis>

Overrides:

remove in class AbstractDao<PrincipalComponentAnalysis>

Parameters:

entity - the entity to be removed