Uses of Class
ubic.gemma.persistence.service.analysis.expression.sampleCoexpression.PreparedCoexMatrices

Packages that use PreparedCoexMatrices

Package	Description
ubic.gemma.persistence.service.analysis.expression.sampleCoexpression

Uses of PreparedCoexMatrices in ubic.gemma.persistence.service.analysis.expression.sampleCoexpression

Methods in ubic.gemma.persistence.service.analysis.expression.sampleCoexpression that return PreparedCoexMatrices

Modifier and Type	Method	Description
PreparedCoexMatrices	SampleCoexpressionAnalysisService.prepare(ExpressionExperiment ee)
PreparedCoexMatrices	SampleCoexpressionAnalysisServiceImpl.prepare(ExpressionExperiment ee)

Methods in ubic.gemma.persistence.service.analysis.expression.sampleCoexpression with parameters of type PreparedCoexMatrices

Modifier and Type	Method	Description
DoubleMatrix<BioAssay,BioAssay>	SampleCoexpressionAnalysisService.compute(ExpressionExperiment ee, PreparedCoexMatrices matrices)	Computes sample correlation matrices for the given experiment.
DoubleMatrix<BioAssay,BioAssay>	SampleCoexpressionAnalysisServiceImpl.compute(ExpressionExperiment ee, PreparedCoexMatrices matrices)	Unfortunately, this method breaks under high contention (see #400, so we need to fully lock the database while undergoing using Isolation.SERIALIZABLE transaction isolation level.