Uses of Class ubic.gemma.persistence.service.analysis.expression.sampleCoexpression.PreparedCoexMatrices (Gemma 1.31.13 API)

Packages that use PreparedCoexMatrices
Package Description

ubic.gemma.persistence.service.analysis.expression.sampleCoexpression

Uses of PreparedCoexMatrices in ubic.gemma.persistence.service.analysis.expression.sampleCoexpression

Methods in ubic.gemma.persistence.service.analysis.expression.sampleCoexpression that return PreparedCoexMatrices
Modifier and Type	Method	Description
`PreparedCoexMatrices`	SampleCoexpressionAnalysisService.`prepare(ExpressionExperiment ee)`
`PreparedCoexMatrices`	SampleCoexpressionAnalysisServiceImpl.`prepare(ExpressionExperiment ee)`

Methods in ubic.gemma.persistence.service.analysis.expression.sampleCoexpression with parameters of type PreparedCoexMatrices
Modifier and Type	Method	Description
`DoubleMatrix<BioAssay,BioAssay>`	SampleCoexpressionAnalysisService.`compute(ExpressionExperiment ee, PreparedCoexMatrices matrices)`	Computes sample correlation matrices for the given experiment.
`DoubleMatrix<BioAssay,BioAssay>`	SampleCoexpressionAnalysisServiceImpl.`compute(ExpressionExperiment ee, PreparedCoexMatrices matrices)`	Unfortunately, this method breaks under high contention (see #400, so we need to fully lock the database while undergoing using `Isolation.SERIALIZABLE` transaction isolation level.