BlacklistedEntityDao (Gemma 1.32.4 API)

All Superinterfaces:: BaseDao<BlacklistedEntity>, BaseVoEnabledDao<BlacklistedEntity,BlacklistedValueObject>

All Known Implementing Classes:: BlacklistedEntityDaoImpl

public interface BlacklistedEntityDao extends BaseVoEnabledDao<BlacklistedEntity,BlacklistedValueObject>

Author:: paul

Method Summary

Modifier and Type

Method

Description

BlacklistedEntity

findByAccession(String accession)

Collection<ExpressionExperiment>

getNonBlacklistedExpressionExperiments(ArrayDesign arrayDesign)

boolean

isBlacklisted(String accession)

boolean

isBlacklisted(ArrayDesign platform)

boolean

isBlacklisted(ExpressionExperiment dataset)

int

removeAll()

Methods inherited from interface ubic.gemma.persistence.service.BaseDao
countAll, create, create, find, findOrCreate, getElementClass, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao
loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Method Details
- isBlacklisted
  
  boolean isBlacklisted(String accession)
- findByAccession
  
  BlacklistedEntity findByAccession(String accession)
  
  Parameters:
  
  accession - accession to search for (typically either a GPL or GSE)
  
  Returns:
  
  null if not blacklisted, or a BlackListedPlatform or BlackListedExperiment.
- isBlacklisted
  
  boolean isBlacklisted(ArrayDesign platform)
- isBlacklisted
  
  boolean isBlacklisted(ExpressionExperiment dataset)
- getNonBlacklistedExpressionExperiments
  
  Collection<ExpressionExperiment> getNonBlacklistedExpressionExperiments(ArrayDesign arrayDesign)
- removeAll
  
  int removeAll()